PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3vx4D_

Fold library id	PDB Header	Molecule	Title
c3vx4D_	PDB header: transport protein	Chain: D: PDB Molecule: putative abc transporter, atp-binding protein coma;	PDBTitle: crystal structure of the nucleotide-binding domain of s. mutans coma,2 a bifunctional atp-binding cassette transporter involved in the3 quorum-sensing pathway

Links to external resources
Added to library: Sat Apr 20 11:14:41 2013

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence N S F L D G D I S F E N L S Y K Y G F G R D T L S D I N L S I K K G S K V S L V G A S G S G K T T L A K L I V N F Y E P N K G I V R I N G N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
G G G
S
S S S S S
S
T T
S T T S S T T S S
S T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence D L K V I D K T A L R R H I S Y L P Q Q A Y V F S G S I M D N L V L G A K E G T S Q E D I I R A C E I A E I R S D I E Q M P Q G Y Q T E L S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T S
S S
S T T
T T
T T
S T T G G G
B

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence D G A G I S G G Q K Q R I A L A R A L L T Q A P V L I L D A A T S S L D I L T E K K I I S N L L Q M T E K T I I F V A H R L S I S Q R T D E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T B S S
T T T
S S T T T T S
T
T T
S
T T S S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240

Sequence V I V M D Q G K I V E Q G T H K E L L A K Q G F Y Y N L F N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
T T S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	N	S	F	L	D	G	D	I	S	F	E	N	L	S	Y	K	Y	G	F	G	R	D	T	L	S	D	I	N	L	S	I	K	K	G	S	K	V	S	L	V	G	A	S	G	S	G	K	T	T	L	A	K	L	I	V	N	F	Y	E	P	N	K	G	I	V	R	I	N	G	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		G	G	G		S											S	S	S	S	S		S										T	T								S	T	T	S	S									T	T	S	S			S							T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	D	L	K	V	I	D	K	T	A	L	R	R	H	I	S	Y	L	P	Q	Q	A	Y	V	F	S	G	S	I	M	D	N	L	V	L	G	A	K	E	G	T	S	Q	E	D	I	I	R	A	C	E	I	A	E	I	R	S	D	I	E	Q	M	P	Q	G	Y	Q	T	E	L	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		T	T	T	S														S	S					S									T	T			T	T													T	T								S	T	T	G	G	G				B
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	D	G	A	G	I	S	G	G	Q	K	Q	R	I	A	L	A	R	A	L	L	T	Q	A	P	V	L	I	L	D	A	A	T	S	S	L	D	I	L	T	E	K	K	I	I	S	N	L	L	Q	M	T	E	K	T	I	I	F	V	A	H	R	L	S	I	S	Q	R	T	D	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T	B	S	S															T	T	T		S						S	T	T	T	T	S														T		T	T								S						T	T	S	S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence	V	I	V	M	D	Q	G	K	I	V	E	Q	G	T	H	K	E	L	L	A	K	Q	G	F	Y	Y	N	L	F	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						T	T														T	T	S