PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c3vw0D_

Fold library id	PDB Header	Molecule	Title
c3vw0D_	PDB header: transcription regulator	Chain: D: PDB Molecule: putative regulatory protein;	PDBTitle: crystal structure of the dequalinum-bound form of ramr2 (transcriptional regulator of tetr family) from salmonella3 typhimurium

Links to external resources
Added to library: Sat Jul 6 10:07:52 2013

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence E D K K Q A L L E A A T Q A I A Q S G I A A S T A V I A R N A G V A E G T L F R Y F A T K D E L I N T L Y L H L K Q D L C Q S M I M E L D R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
G G G
T S
S S S
T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence S I T D A K M M T R F I W N S Y I S W G L N H P A R H R A I R Q L A V S E K L T K E T E Q R A D D M F P E L R D L C H R S V L M V F M S D E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
T S S
T T S S T B
G G G T S T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . .

Sequence Y R A F G D G L F L A L A E T T M D F A A R D P A R A G E Y I A L G F E A M W R A L T R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
B

Download: PDB structure FASTA sequence
Hidden Markov model

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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	E	D	K	K	Q	A	L	L	E	A	A	T	Q	A	I	A	Q	S	G	I	A	A	S	T	A	V	I	A	R	N	A	G	V	A	E	G	T	L	F	R	Y	F	A	T	K	D	E	L	I	N	T	L	Y	L	H	L	K	Q	D	L	C	Q	S	M	I	M	E	L	D	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																			G	G	G											T	S										S	S																								S		T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	S	I	T	D	A	K	M	M	T	R	F	I	W	N	S	Y	I	S	W	G	L	N	H	P	A	R	H	R	A	I	R	Q	L	A	V	S	E	K	L	T	K	E	T	E	Q	R	A	D	D	M	F	P	E	L	R	D	L	C	H	R	S	V	L	M	V	F	M	S	D	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T																																		T	S	S											T	T	S	S	T										B		G	G	G	T	S	T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
Sequence	Y	R	A	F	G	D	G	L	F	L	A	L	A	E	T	T	M	D	F	A	A	R	D	P	A	R	A	G	E	Y	I	A	L	G	F	E	A	M	W	R	A	L	T	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T																																										B