PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c3vuqD_

Fold library id	PDB Header	Molecule	Title
c3vuqD_	PDB header: transcription regulator	Chain: D: PDB Molecule: transcriptional regulator (tetr/acrr family);	PDBTitle: crystal structure of ttha0167, a transcriptional regulator, tetr/acrr2 family from thermus thermophilus hb8

Links to external resources
Added to library: Sat Mar 2 11:07:40 2013

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence V K D K K R A I L E A T L A V L R E R G L S G L K M E E V A R R A E V G K G T I Y L Y F R D K R D L L K A L V E E R T W A F Y R E V E E V V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T T
T T
T T G G G G T
S S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence R R K A P F F V R L E E V L R R R L A W V Q E W R G L W A A V A R E A M D D P T P W L K G L H E H Y L R L L E E L L R S G Q S E G A V R T G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S S
T T T
S
T S S
T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . .

Sequence L S P R A T A A V I A A M G C T P S L E V E A Y L E H L M E V L R K G V E P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
S
S S
T T
S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	V	K	D	K	K	R	A	I	L	E	A	T	L	A	V	L	R	E	R	G	L	S	G	L	K	M	E	E	V	A	R	R	A	E	V	G	K	G	T	I	Y	L	Y	F	R	D	K	R	D	L	L	K	A	L	V	E	E	R	T	W	A	F	Y	R	E	V	E	E	V	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																				T	T	T	T										T	T			T	T	G	G	G	G	T		S	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	R	R	K	A	P	F	F	V	R	L	E	E	V	L	R	R	R	L	A	W	V	Q	E	W	R	G	L	W	A	A	V	A	R	E	A	M	D	D	P	T	P	W	L	K	G	L	H	E	H	Y	L	R	L	L	E	E	L	L	R	S	G	Q	S	E	G	A	V	R	T	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		S	S	S																				T	T	T											S																												T	S	S		T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
Sequence	L	S	P	R	A	T	A	A	V	I	A	A	M	G	C	T	P	S	L	E	V	E	A	Y	L	E	H	L	M	E	V	L	R	K	G	V	E	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S														S			S	S			T	T													S