PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3vr0D_

Fold library id	PDB Header	Molecule	Title
c3vr0D_	PDB header: protein binding	Chain: D: PDB Molecule: putative uncharacterized protein;	PDBTitle: crystal structure of pyrococcus furiosus pbab, an archaeal proteasome2 activator

Links to external resources
Added to library: Sat Apr 6 08:26:25 2013

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence G K M K E T T I V V Y E R P D I Y D P I F I E G L P G I G L V G K L A A E H L I Q E L K A K K F A E L Y S P H F M H Q V L I R K N S V V E L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
S
S
S
G G G T T
T T S
S
G G G

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence M K N E F Y Y W K S P D D E H R D L I I V T G D T Q V P P T D S Y G H F E V A G K M L D F V Q E F G T R E I I T M G G Y Q V P E I Q G E P R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S T T S
S
T T
T T T
S
S S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence V L A A V T H E D L I E Y Y K S K L E G C S V E V I W R E D E G G A I V G A A G L L L G I G K L R G M F G I S L L G E S L G Y I V D A K A A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S T T T T
S S
T T
S T T
S S S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . .

Sequence K A V L S A V T K I L G L E I D M T A L D E R A K E T E E I L R K V E E M Q

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	G	K	M	K	E	T	T	I	V	V	Y	E	R	P	D	I	Y	D	P	I	F	I	E	G	L	P	G	I	G	L	V	G	K	L	A	A	E	H	L	I	Q	E	L	K	A	K	K	F	A	E	L	Y	S	P	H	F	M	H	Q	V	L	I	R	K	N	S	V	V	E	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				S	S						S							S								S		G	G	G													T	T										T	T	S		S						G	G	G
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	M	K	N	E	F	Y	Y	W	K	S	P	D	D	E	H	R	D	L	I	I	V	T	G	D	T	Q	V	P	P	T	D	S	Y	G	H	F	E	V	A	G	K	M	L	D	F	V	Q	E	F	G	T	R	E	I	I	T	M	G	G	Y	Q	V	P	E	I	Q	G	E	P	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)											S	S	T	T	S									S					T	T																		T	T	T													S				S	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	V	L	A	A	V	T	H	E	D	L	I	E	Y	Y	K	S	K	L	E	G	C	S	V	E	V	I	W	R	E	D	E	G	G	A	I	V	G	A	A	G	L	L	L	G	I	G	K	L	R	G	M	F	G	I	S	L	L	G	E	S	L	G	Y	I	V	D	A	K	A	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						S	S	T	T										T	T		S	S								T	T					S												T	T												S	S	S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
Sequence	K	A	V	L	S	A	V	T	K	I	L	G	L	E	I	D	M	T	A	L	D	E	R	A	K	E	T	E	E	I	L	R	K	V	E	E	M	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)												T