PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c3vqzA_

Fold library id	PDB Header	Molecule	Title
c3vqzA_	PDB header: hydrolase/hydrolase inhibitor	Chain: A: PDB Molecule: metallo-beta-lactamase;	PDBTitle: crystal structure of metallo-beta-lactamase, smb-1, in a complex with2 mercaptoacetic acid

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Added to library: Sat Feb 16 08:49:03 2013

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence R D W S S P Q Q P F T I Y G N T H Y V G T G G I S A V L L S S P Q G H I L V D G T T E K G A Q V V A A N I R A M G F K L S D V K Y I L S T H

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
T T
S S S
T T
T T T T T
G G G
S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence S H E D H A G G I S A M Q K L T G A T V L A G A A N V D T L R T G V S P K S D P Q F G S N F P G S A K V R A V A D G E L V K L G P L A V K A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S T T
G G G S
T T S T T
S S
T T
T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence H A T P G H T E G G I T W T W Q S C E Q G K C K D V V F A D S L T A V S A D S Y R F S D H P E V V A S L R G S F E A V E K L S C D I A I A A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S S T T
T T
T T
G G G
T S
S S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . .

Sequence H P E V N D M W T R Q Q R A A K E G N S A Y V D N G A C R A I A A A G R K R L E T R L A S E K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S G G G G T
G G G G B
T T

Download: PDB structure FASTA sequence
Hidden Markov model

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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	R	D	W	S	S	P	Q	Q	P	F	T	I	Y	G	N	T	H	Y	V	G	T	G	G	I	S	A	V	L	L	S	S	P	Q	G	H	I	L	V	D	G	T	T	E	K	G	A	Q	V	V	A	A	N	I	R	A	M	G	F	K	L	S	D	V	K	Y	I	L	S	T	H
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			T	T										T	T							S	S	S								T	T										T	T	T											T	T			G	G	G							S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	S	H	E	D	H	A	G	G	I	S	A	M	Q	K	L	T	G	A	T	V	L	A	G	A	A	N	V	D	T	L	R	T	G	V	S	P	K	S	D	P	Q	F	G	S	N	F	P	G	S	A	K	V	R	A	V	A	D	G	E	L	V	K	L	G	P	L	A	V	K	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		S					T	T																G	G	G							S				T	T	S	T	T									S	S						T	T						T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	H	A	T	P	G	H	T	E	G	G	I	T	W	T	W	Q	S	C	E	Q	G	K	C	K	D	V	V	F	A	D	S	L	T	A	V	S	A	D	S	Y	R	F	S	D	H	P	E	V	V	A	S	L	R	G	S	F	E	A	V	E	K	L	S	C	D	I	A	I	A	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					S	S	S	T	T											T	T																	T	T			G	G	G																	T	S			S					S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.
Sequence	H	P	E	V	N	D	M	W	T	R	Q	Q	R	A	A	K	E	G	N	S	A	Y	V	D	N	G	A	C	R	A	I	A	A	A	G	R	K	R	L	E	T	R	L	A	S	E	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S	G	G	G	G	T													G	G	G	G	B		T	T