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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c3vm7A_

Fold library idPDB HeaderMoleculeTitle
c3vm7A_PDB header: hydrolaseChain: A: PDB Molecule: alpha-amylase;PDBTitle: structure of an alpha-amylase from malbranchea cinnamomea


Added to library: Sat Jun 8 09:39:38 2013
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence ATPDEWRSRSIYQVLTDRFARGDGSPDAPCDTGARKYCGGNYRGLISQLDYIQGMGFDSVWISPITKQFE
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Known secondary structure (DSSP)

TT





TT

S
S


GGG






TTT





S
 .........80.........90.........100.........110.........120.........130.........140
Sequence DDWNGAPYHGYWQTDLYALNEHFGTEEDLRALADELHARGMFLMVDVVINHNGWPGDAASIDYSQFNPFN
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Known secondary structure (DSSP)

TT


TTS
S
TTT

TT


SB

BSS
GGG

GGGSBS

 .........150.........160.........170.........180.........190.........200.........210
Sequence SSDYYHPPCEINYDDQTSVEQCWLYTGANALPDLKTEDPHVSQVHNDWIADLVSKYSIDGLRIDTTKHVD
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Known secondary structure (DSSP) SGGGB



B

TT
SBS
SSSSB

BB
TTST

TTGGGS
 .........220.........230.........240.........250.........260.........270.........280
Sequence KPAIGSFNDAAGVYAVGEVYHGDPAYTCPYQDWVDGVLNFPVYYPLIDAFKSPSGTMWSLVDNINKVFQT
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Known secondary structure (DSSP) TS



S
GGGGGTSSB
S
TT

S
 .........290.........300.........310.........320.........330.........340.........350
Sequence CNDPRLLGTFSENHDIPRFASYTQDLALAKNVLAFTILFDGIPIVYAGQEQQYSGDSDPYNREALWLSGF
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Known secondary structure (DSSP) SS
GGGSS

TTS




SSSTTGGGT



STTTT


GGGGT
 .........360.........370.........380.........390.........400.........410.........420
Sequence NTDAPLYKHIAACNRIRSHAVSNDDAYITTPTDIKYSDDHTLALVKGAVTTVLTNAGANAGETTVTVEAT
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Known secondary structure (DSSP)
TTS
TTTTTS


SSTT
S
TT




 .........430.........440.........450.........460.........470
Sequence GYASGEQVTDVLSCESIAASDGGRLSVTLNQGLPRVFFPTDALAGSGLCE
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Known secondary structure (DSSP) S

TT
TTTT
BGGGBTT

SGGGTTSSS


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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