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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c3vkhB_

Fold library idPDB HeaderMoleculeTitle
c3vkhB_PDB header: motor proteinChain: B: PDB Molecule: dynein heavy chain, cytoplasmic;PDBTitle: crystal structure of an motor protein


Added to library: Sat Mar 17 12:26:02 2012
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence AIKDRHWKILKKRLNTNWIITELTLGSIWDSDLARNENIYREVITAAQGEIALEEFLKGVREFWTTLELD
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Known secondary structure (DSSP)


SSS




TTS
SS
TTTTSS
B
 .........80.........90.........100.........110.........120.........130.........140
Sequence LVNYQRKCKLVRGWDDLFNKLAEHLNSISAMKMSPYYKVFEEEANHWDDRLNKVRSLLDVWIDVQRRWVY
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Known secondary structure (DSSP) TTT
TTSSTT
 .........150.........160.........170.........180.........190.........200.........210
Sequence LEGIFINQLLPAESTRFKSINSEFIAILKKVSGAPLILEVLAIERIQQTMERLSDLLGKVQKALGEYLER
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Known secondary structure (DSSP)

TTTST

BTTSTT
 .........220.........230.........240.........250.........260.........270.........280
Sequence QRSAFARFYFVGDEDLLEIIGNSKDIIKIQKHFRKMFAGLANLTLDDEKTTIIGMSSAEGETVTFKKPIS
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Known secondary structure (DSSP) SGGGGGS
TTT
GGGSSS
SS

TTS
 .........290.........300.........310.........320.........330.........340.........350
Sequence IANGPKIHEWLTMVESEMKSTLATLLSESLQHFNQVDVNDHSKYSEWVDNYPTQLVLLTSQIVWSTQVDQ
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Known secondary structure (DSSP)
SS


TS
TT
TTS
 .........360.........370.........380.........390.........400.........410.........420
Sequence ALGGGTLQQSKIQEQLQSIEQTTQMILNNLADSVLQDLSAQKRKKFEHLITELVHQRDVVRQLQKCKNLT
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Known secondary structure (DSSP)
SS
S
TGGGS



SS

 .........430.........440.........450.........460.........470.........480.........490
Sequence GNKDFDWLYHMRYYYDATQENVLHKLVIHMANATFYYGFEYLGIGERLVQTPLTDRCYLTLTQALESRMG
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Known secondary structure (DSSP)
SSSSS
TTSSSSTTSTT






S






TTT
 .........500.........510.........520.........530.........540.........550.........560
Sequence GNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFDLQAMSRIFVGLCQCGAWGCFDEFNRLEERILSAV
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Known secondary structure (DSSP)
SSSSSTT


SS


TT
TGGGS
 .........570.........580.........590.........600.........610.........620.........630
Sequence SQQIQTIQVALKENSKEVNISLHQDMGIFVTMNPGYAGRSNLPDNLKKLFRSMAMIKPDREMIAQVMLYS
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Known secondary structure (DSSP) TT
SB


B

TT

B


STT


S
GGGTTS

S

 .........640.........650.........660.........670.........680.........690.........700
Sequence QGFKTAEVLAGKIVPLFKLCQEQLSAQSHYDFGLRALKSVLVSAGGIKRKCDQIYCQYEIGVLLNSINDT
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Known secondary structure (DSSP) T
SSS


SS


STT

TT
 .........710.........720.........730.........740.........750.........760.........770
Sequence MIPKLVADDIPLIQSLLLDVFPGLQPIQMDQLRKKIQEIAKQRHLVTKQEWVEKILQLHQILNINHGVMM
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Known secondary structure (DSSP) TGGG

GGG








TTTT



TTT
S
 .........780.........790.........800.........810.........820.........830.........840
Sequence VGPSGGGKTTSWEVYLEAIEQVDNIKSEAHVMDPKAITKDQLFGSLDLTTREWTDGLFTATLRRIIDNVR
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Known secondary structure (DSSP)


SSSSS



B
STTS


B
SSS

B


TTTT
 .........850.........860.........870.........880.........890.........900.........910
Sequence GESTKRHWIIFDGDVDPEWVENLNSLLDDNKLLTLPNGERLALPNNVRVMFEVQDLKYATLATISRCGMV
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Known secondary structure (DSSP) SGGG
S


TTGGGTTSSS


TTS



TT



S

SS

GGGTTTS
 .........920.........930.........940.........950.........960.........970.........980
Sequence WFSEEILTTQMIFQNYLDTLSNEPFDPQEAGLKVQKECAAIISQYFEPGGLVHKVLEDAGQRPHIMDFTR
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Known secondary structure (DSSP)


GGGS
S
SSS


TTTTTSSTT
TTS
BSS


 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence LRVLNSFFSLMNRSIVNVIEYNQLHSDFPMSPENQSNYITNRLLYSLMWGLGGSMGLVERENFSKFIQTI
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Known secondary structure (DSSP) T
TTS


TTSSTTB
TT
 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence AITPVPANTIPLLDYSVSIDDANWSLWKNKVEVETHKVASPDVVIPTVDTTRHVDVLHAWLSEHRPLILC
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Known secondary structure (DSSP)

S



TTS
GGG
SSS
SGGG




STTSS
TT




TTTT


 .........1130.........1140.........1150.........1160.........1170.........1180.........1190
Sequence GPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATTPELLLKTFDHHCEYKRTPSGETVLRPTQLGKWLVVFC
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Known secondary structure (DSSP)

TTSST
SS

B

SS

TTTTTTTTSSTTS
 .........1200.........1210.........1220.........1230.........1240.........1250.........1260
Sequence DEINLPSTDKYGTQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLRHAPI
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Known secondary structure (DSSP) STT
S


TTS

SSTTTT
S

TTSSS




TT

B
 .........1270.........1280.........1290.........1300.........1310.........1320.........1330
Sequence LLVDFPSTSSLTQIYGTFNRALMKLLPNLRSFADNLTDAMVEFYSESQKRFTPDIQAHYIYSPRELSRWD
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Known secondary structure (DSSP)






TTSSSGGGTTS
TTT
TT



 .........1340.........1350.........1360.........1370.........1380.........1390.........1400
Sequence RALLEAIQTMDGCTLEGLVRLWAHEALRLFQDRLVETEEKEWTDKKIDEVALKHFPSVNLDALKRPILYS
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Known secondary structure (DSSP) TSS


TTT

S
TTS
TTTT
S


 .........1410.........1420.........1430.........1440.........1450.........1460.........1470
Sequence NWLTKDYQPVNRSDLREYVKARLKVFYEEELDVPLVLFNEVLDHILRIDRVFRQPQGHALLIGVSGGGKS
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Known secondary structure (DSSP) SSSSSSS

S







TSTT

B


TTSS
 .........1480.........1490.........1500.........1510.........1520.........1530.........1540
Sequence VLSRFVAWMNGLSIYTIKVNNNYKSSDFDDDLRMLLKRAGCKEEKICFIFDESNVLESSFLERMNTLLAG
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Known secondary structure (DSSP) TT





TT

TS


TTS

STS
 .........1550.........1560.........1570.........1580.........1590.........1600.........1610
Sequence GEEEFTALMHACKETAQRSEEELYKYFTSQVRRNLHVVFTMNPASPDFHNRSATSPALFNRCVLDWFGEW
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Known secondary structure (DSSP)





TTTB
TTSSSST
TTS


S
 .........1620.........1630.........1640.........1650.........1660.........1670.........1680
Sequence SPEALFQVGSEFTRNLDLENPQYIAPPVFIQEAEIMMAIPPSHRDAVVSSLVYIHQTIGEANIRLLKRQG
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Known secondary structure (DSSP)
TTSSS



TT



TT


SS


 .........1690.........1700.........1710.........1720.........1730.........1740.........1750
Sequence RQNYVTPRHYLDFINQVVLLINEKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQA
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Known secondary structure (DSSP)





 .........1760.........1770.........1780........
Sequence NQKLKQMVQDQQAAEIKQKDARELQVQLDVRNKEIAVQ
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Known secondary structure (DSSP) TSTT


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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