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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c3vkgB_

Fold library idPDB HeaderMoleculeTitle
c3vkgB_PDB header: motor proteinChain: B: PDB Molecule: dynein heavy chain, cytoplasmic;PDBTitle: crystal structure of an motor protein


Added to library: Sat Mar 17 13:33:43 2012
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence LVNYQRKCKLVRGWDDLFNKLAEHLNSISHWDDRLNKVRSLLDVWIDVQRRWVYLEGIFSGSGDINQLLP
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Known secondary structure (DSSP)
TTT


TT

TSSSSSS
 .........80.........90.........100.........110.........120.........130.........140
Sequence AESTRFKSINSEFIAILKKVSGAPLILEVLAIERIQQTMERLSDLLGKVQKALGEYLERQRSAFARFYFV
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Known secondary structure (DSSP) TTT


TSTTSGGGGGS
 .........150.........160.........170.........180.........190.........200.........210
Sequence GDEDLLEIIGNSKDIIKIQKHFRKMFAGLANLTLDDEKTTIIGMSSAEGETVTFKKPISIANGPKIHEWL
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Known secondary structure (DSSP)
TTT
TT
SS


TT


TTS
GGG


 .........220.........230.........240.........250.........260.........270.........280
Sequence TMVESEMKSTLATLLSESLQHFNQVDVNDHSKYSEWVDNYPTQLVLLTSQIVWSTQVDQALGGGTLQQSK
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Known secondary structure (DSSP) S

TTSTTS

SS
S
 .........290.........300.........310.........320.........330.........340.........350
Sequence IQEQLQSIEQTTQMILNNLADSVLQDLSAQKRKKFEHLITELVHQRDVVRQLQKCKNLTGNKDFDWLYHM
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Known secondary structure (DSSP) TTTTS


T
SS


TT
SS
 .........360.........370.........380.........390.........400.........410.........420
Sequence RYYYDATQENVLHKLVIHMANATFYYGFEYLGIGERLVQTPLTDRCYLTLTQALESRMGGNPFGPAGTGK
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Known secondary structure (DSSP)

TT
SSGGGS
TT







S






TT

STTSS
 .........430.........440.........450.........460.........470.........480.........490
Sequence TETVKALGSQLGRFVLVFCCDEGFDLQAMSRIFVGLCQCGAWGCFDEFNRLEERILSAVSQQIQTIQVAL
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Known secondary structure (DSSP) TT


SS


T
TGGGS
 .........500.........510.........520.........530.........540.........550.........560
Sequence KENSKEVNISLHQDMGIFVTMNPGYAGRSNLPDNLKKLFRSMAMIKPDREMIAQVMLYSQGFKTAEVLAG
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Known secondary structure (DSSP) TT
SB


B

TT
B


GGG


S
TT

S

T
SS
 .........570.........580.........590.........600.........610.........620.........630
Sequence KIVPLFKLCQEQLSAQSHYDFGLRALKSVLVSAGGIKRKCITDAESKTKADQIYCQYEIGVLLNSINDTM
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Known secondary structure (DSSP) S


TT


ST



ST
 .........640.........650.........660.........670.........680.........690.........700
Sequence IPKLVADDIPLIQSLLLDVFPGLQPIQMDQLRKKIQEIAKQRHLVTKQEWVEKILQLHQILNINHGVMMV
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Known secondary structure (DSSP) GGGS
GGG








TT




S
 .........710.........720.........730.........740.........750.........760.........770
Sequence GPSGGGKTTSWEVYLEAIEQVDNIKSEAHVMDPKAITKDQLFGSLDLTTREWTDGLFTATLRRIIDNVRG
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Known secondary structure (DSSP)
SSSSST


TTTS

TTT


TTTTS
 .........780.........790.........800.........810.........820.........830.........840
Sequence ESTKRHWIIFDGDVDPEWVENLNSLLDDNKLLTLPNGERLALPNNVRVMFEVQDLKYATLATISRCGMVW
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Known secondary structure (DSSP)
TTS
S


TTSSS


TTT



TTS

TT

GGGTTTS
 .........850.........860.........870.........880.........890.........900.........910
Sequence FSEEILTTQMIFQNYLDTLSNEPFDPQEAGLKVQKECAAIISQYFEPGGLVHKVLEDAGQRPHIMDFTRL
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Known secondary structure (DSSP)

GGGS
S
SSTT

TTGGGSTT
TTS

SS


 .........920.........930.........940.........950.........960.........970.........980
Sequence RVLNSFFSLMNRSIVNVIEYNQLHSDFPMSPENQSNYITNRLLYSLMWGLGGSMGLVERENFSKFIQTIA
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Known secondary structure (DSSP) TTS


TTTTS
TT
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence ITPVPANTIPLLDYSVSIDDANWSLWKNKVEVETHKVASPDVVIPTVDTTRHVDVLHAWLSEHRPLILCG
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Known secondary structure (DSSP)
S



TTS
GGG
TTT
SGGG




GGGTT
TT




TT



 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence PPGSGKTMTLTSTLRAFPDFEVVSLNFSSATTPELLLKTFDHHCEYKRTPSGETVLRPTQLGKWLVVFCD
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Known secondary structure (DSSP) STTSSTTT
TT

TT

TTTTTTTTSSTTS
 .........1130.........1140.........1150.........1160.........1170.........1180.........1190
Sequence EINLPSTDKYGTQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLRHAPIL
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Known secondary structure (DSSP) TTT
S


TTS

STTTT
S

TTSTT




TS

 .........1200.........1210.........1220.........1230.........1240.........1250.........1260
Sequence LVDFPSTSSLTQIYGTFNRALMKLLPNLRSFADNLTDAMVEFYSESQKRFTPDIQAHYIYSPRELSRWDR
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Known secondary structure (DSSP)




TTS
GGGGGGS
TTT
TT



 .........1270.........1280.........1290.........1300.........1310.........1320.........1330
Sequence ALLEAIQTMDGCTLEGLVRLWAHEALRLFQDRLVETEEKEWTDKKIDEVALKHFPSVNLDALKRPILYSN
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Known secondary structure (DSSP) TTSS


TTT

S
TTS
GGGG
SS

B
S
 .........1340.........1350.........1360.........1370.........1380.........1390.........1400
Sequence WLTKDYQPVNRSDLREYVKARLKVFYEEELDVPLVLFNEVLDHILRIDRVFRQPQGHALLIGVSGGGKSV
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Known secondary structure (DSSP) SSSSS

B

SS







TSTT


TTSS
 .........1410.........1420.........1430.........1440.........1450.........1460.........1470
Sequence LSRFVAWMNGLSIYTIKVNNNYKSSDFDDDLRMLLKRAGCKEEKICFIFDESNVLESSFLERMNTLLAGG
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Known secondary structure (DSSP) TT





TT

TTTTS


TTT
SSTSS
 .........1480.........1490.........1500.........1510.........1520.........1530.........1540
Sequence EEGEEFTALMHACKETAQRSEEELYKYFTSQVRRNLHVVFTMNPASPDFHNRSATSPALFNRCVLDWFGE
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Known secondary structure (DSSP)

TTGGG

TTTTTT
TTSSSS
TTS
 .........1550.........1560.........1570.........1580.........1590.........1600.........1610
Sequence WSPEALFQVGSEFTRNLDLENPQYIAPPVFIQEAEIMMAIPPSHRDAVVSSLVYIHQTIGEANIRLLKRQ
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Known secondary structure (DSSP)

TTTTS



TT







SS

 .........1620.........1630.........1640.........1650.........1660.........1670.........1680
Sequence GRQNYVTPRHYLDFINQVVLLINEKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQ
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Known secondary structure (DSSP)






 .........1690.........1700.........1710.........1720.........1730.........1740.........1750
Sequence ANQKLKQMVQDQQAAEIKQKDARELQVQLDVRNKEIAVQEQLENAANELKLKQDEIVATITALEKSIATY
Predicted secondary structure
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Known secondary structure (DSSP) TT


TTTT
 .........1760.........1770.........1780.........1790.........1800.........1810.........1820
Sequence KEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSENFNTQMSTVVGDVVLASAFLAYI
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Known secondary structure (DSSP) TTTTTTTG
 .........1830.........1840.........1850.........1860.........1870.........1880.........1890
Sequence GFFDQNFRTDLMRKWMIRLDSVGIKFKSDLSVPSFLSKPEERLNWHANSLPSDELCIENAIMLKRFNRYP
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Known secondary structure (DSSP) GGS
T



TT

SS
TT


S
SS
 .........1900.........1910.........1920.........1930.........1940.........1950.........1960
Sequence LVIDPSGQAMEFLMNQYADKKITKTSFLDSSFMKNLESALRFGCPLLVQDVENIDPVLNPVLNKPSFMIF
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Known secondary structure (DSSP)
TTSTT

SSSTS


GGG

STT




 .........1970.........1980.........1990.........2000.........2010.........2020.........2030
Sequence LFTRDPTAHFTPDLCSRVTFVNFTVTPSSLQSQCLHEALKTERPDTHKKRSDLLKIQGEFQVKLRILEKS
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Known secondary structure (DSSP) S
TT








STTT
 .........2040.........2050.........2060.........2070.........2080.........2090.........2100
Sequence LLNALSQASGNILDDDSVISTLETLKKETTEIALKVEETETVMQEISEVSALYNPMALSCSRVYFAMEEL
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Known secondary structure (DSSP) TS
TGGGGT

TTTG
 .........2110.........2120.........2130.........2140.........2150.........2160.........2170
Sequence SQFHLYQFSLRAFLDIFYNLLNNNPNLVDKKDPNERLVYLSKDIFSMTFNRVTRTLLNDDKLTFALQLTI
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Known secondary structure (DSSP) GGSTT



SS
GGGSS


TTTS
TT
 .........2180.........2190.........2200.........2210.........2220.........2230.........2240
Sequence ISVKGTSNEIEESEWDFLLKGGDNLTSIKETIPQLDSLLSTTQQKWLICLRQQVPSFSKLVDHIQQNSSD
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Known secondary structure (DSSP) STTSTT


TTTTTTS




GGGGGTS

SS
SST
 .........2250.........2260.........2270.........2280.........2290.........2300.........2310
Sequence WKQFFGKDQVGEPIIPESWIVAQAQLSNQQSTIVSNFRKILLMKAFHSDRVLQYSHSFVCSVFGEDFLNT
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Known secondary structure (DSSP)
SS
SS




SSS



GGGTTT
SSSS

 .........2320.........2330.........2340.........2350.........2360.........2370.........2380
Sequence QELDMANIVEKEVKSSSPLLLCSVPGYDASSKVDDLALQLHKQYKSFAIGSPEGFELAEKSIYAAAKSGT
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Known secondary structure (DSSP)



T

SSS

TT


T

TTST
 .........2390.........2400.........2410.........2420.........2430.........2440.........2450
Sequence WVLLKNIHLAPQWLVQLEKKLHSLSPHPSFRLFMTSEIHPALPANLLRMSNVFSYENPPGVKANLLHTFI
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Known secondary structure (DSSP)
GGG
T



TT
S
TTS
TS




 .........2460.........2470.........2480.........2490.........2500.........2510.........2520
Sequence GIPATRMDKQPAERSRIYFLLAWFHAIIQERLRYIPLGWTKFFEFNDADLRGALDSIDYWVDLYSKGRSN
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Known secondary structure (DSSP) T

T
SSTGGGGTTTS
SS





SS
S
 .........2530.........2540.........2550.........2560.........2570.........2580.........2590
Sequence IDPDKIPWIAVRTILGSTIYGGRIDNEFDMRLLYSFLEQLFTPSAFNPDFPLVPSIGLSVPEGTTRAHFM
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Known secondary structure (DSSP)

GGGS
TTTSTT


SSSGGGSTT
TTTT




S
 .........2600.........2610.........2620.........2630.........2640.........2650.........2660
Sequence KWIEALPEISTPIWLGLPENAESLLLSNKARKMINDLQKMQSSESSSEDKGKAKLKRIKDPLFRCFEREI
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Known secondary structure (DSSP) TS
S


TS
TT


T






 .........2670.........2680.........2690.........2700.........2710.........2720.........2730
Sequence STGGKLVKKITNDLANLLELKSTNYLRSLTTSISKGIVPKEWKWYSVPETISLSVWISDFSKRMQQLSEI
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Known secondary structure (DSSP)



T


TTT

S


TT

 .........2740.........2750.........2760.........2770.........2780.........2790.........2800
Sequence SESQVWLGGLLNPEAYITATRQSASQLNGWENLRLHASSFNVKGMALEGAVWNNDQLTPTDILSTPISIA
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Known secondary structure (DSSP) T

B
GGGSS
TTT








SS
TT

S
SS
 .........2810.........2820.........2830.........2840.........2850...
Sequence TLTWKDKDKLSVPVYLNETRSELLFSIDLPYDQSTSKQNWYQRSVSISSWKSD
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Known secondary structure (DSSP)




SSTT

S
B
TTS
TTT
S




Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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