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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c3vkgA_

Fold library idPDB HeaderMoleculeTitle
c3vkgA_PDB header: motor proteinChain: A: PDB Molecule: dynein heavy chain, cytoplasmic;PDBTitle: x-ray structure of an mtbd truncation mutant of dynein motor domain


Added to library: Thu Jan 10 01:56:21 2013
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence EIDSLKETAWSAIIPAFDHAQNLIKIYLKGNAIITDLHSEAIKDRHWKILKKRLNTNWIITELTLGSIWD
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Known secondary structure (DSSP)


TTT



TTTSTT

TT



TTS

 .........80.........90.........100.........110.........120.........130.........140
Sequence SDLARNENIYREVITAAQGEIALEEFLKGVREFWTTLELDLVNYQRKCKLVRGWDDLFNKLAEHLNSISA
Predicted secondary structure








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Known secondary structure (DSSP) S

B
TTT
 .........150.........160.........170.........180.........190.........200.........210
Sequence MKMSPYYKVFEEEANHWDDRLNKVRSLLDVWIDVQRRWVYLEGIFINQLLPAESTRFKSINSEFIAILKK
Predicted secondary structure





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Known secondary structure (DSSP) TTSSTTTTGGGG

TTTS
 .........220.........230.........240.........250.........260.........270.........280
Sequence VSGAPLILEVLAIERIQQTMERLSDLLGKVQKALGEYLERQRSAFARFYFVGDEDLLEIIGNSKDIIKIQ
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Known secondary structure (DSSP) S
BTTSTTTSGGGGGS
GGG
GGGTG
 .........290.........300.........310.........320.........330.........340.........350
Sequence KHFRKMFAGLANLTLDDEKTTIIGMSSAEGETVTFKKPISIANGPKIHEWLTMVESEMKSTLATLLSESL
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Known secondary structure (DSSP) GGGGGT
SS


TTS

TTS
SSSS

 .........360.........370.........380.........390.........400.........410.........420
Sequence QHFNQVDVNDHSKYSEWVDNYPTQLVLLTSQIVWSTQVDQALGGGTLQQSKIQEQLQSIEQTTQMILNNL
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Known secondary structure (DSSP) TS

TT
TS
TTS
S
 .........430.........440.........450.........460.........470.........480.........490
Sequence ADSVLQDLSAQKRKKFEHLITELVHQRDVVRQLQKCKNLTGNKDFDWLYHMRYYYDATQENVLHKLVIHM
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Known secondary structure (DSSP) TTS


T

S

STT
TS
SSSSSSGGG
 .........500.........510.........520.........530.........540.........550.........560
Sequence ANATFYYGFEYLGIGERLVQTPLTDRCYLTLTQALESRMGGNPFGPAGTGKTETVKALGSQLGRFVLVFC
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Known secondary structure (DSSP) TT






S






TT

STTSSTT

 .........570.........580.........590.........600.........610.........620.........630
Sequence CDEGFDLQAMSRIFVGLCQCGAWGCFDEFNRLEERILSAVSQQIQTIQVALKENSKEVELLNISLHQDMG
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Known secondary structure (DSSP)
SS


T
TTTSS
T
S





TT
 .........640.........650.........660.........670.........680.........690.........700
Sequence IFVTMNPGYAGRSNLPDNLKKLFRSMAMIKPDREMIAQVMLYSQGFKTAEVLAGKIVPLFKLCQEQLSAQ
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Known secondary structure (DSSP)
B


GGG


S
TT

S

TTT
S
SS


 .........710.........720.........730.........740.........750.........760.........770
Sequence SHYDFGLRALKSVLVSAGGIKRKCQPPDAESKTKADQIYCQYEIGVLLNSINDTMIPKLVADDIPLIQSL
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Known secondary structure (DSSP) TT


SS




TTTTTS
GGG
 .........780.........790.........800.........810.........820.........830.........840
Sequence LLDVFPGSQLQPIQMDQLRKKIQEIAKQRHLVTKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWEV
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Known secondary structure (DSSP) STT







TT



TT
S
SSSSS
 .........850.........860.........870.........880.........890.........900.........910
Sequence YLEAIEQVDNIKSEAHVMDPKAITKDQLFGSLDLTTREWTDGLFTATLRRIIDNVRGESTKRHWIIFDGD
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Known secondary structure (DSSP) TTTTT

TTTS

TTT


TTSSSGGGS
 .........920.........930.........940.........950.........960.........970.........980
Sequence VDPEWVENLNSLLDDNKLLTLPNGERLALPNNVRVMFEVQDLKYATLATISRCGMVWFSEEILTTQMIFQ
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Known secondary structure (DSSP)

TTTSSS


TTS



TTS

TT

TS

TTSS
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence NYLDTLSNEPFDPQEKEQQKRNENAIPAGLKVQKECAAIISQYFEPGGLVHKVLEDAGQRPHIMDFTRLR
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Known secondary structure (DSSP) TTS
S
T


STT
TS

SS


 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence VLNSFFSLMNRSIVNVIEYNQLHSDFPMSPENQSNYITNRLLYSLMWGLGGSMGLVERENFSKFIQTIAI
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Known secondary structure (DSSP) TTTS


TTS
TT
S
 .........1130.........1140.........1150.........1160.........1170.........1180.........1190
Sequence TPVPANTIPLLDYSVSIDDANWSLWKNKVEVETHKVASPDVVIPTVDTTRHVDVLHAWLSEHRPLILCGP
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Known secondary structure (DSSP) S



TTS
GGG
TTT
STT





STTTT
TT




TT


SS
 .........1200.........1210.........1220.........1230.........1240.........1250.........1260
Sequence PGSGKTMTLTSTLRAFPDFEVVSLNFSSATTPELLLKTFDHHCEYKRTPSGETVLRPTQLGKWLVVFCDE
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Known secondary structure (DSSP) TTSSGGG
TT


TT


TTS
SSTT
TT
 .........1270.........1280.........1290.........1300.........1310.........1320.........1330
Sequence INLPSTDKYGTQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLRHAPILL
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Known secondary structure (DSSP) TT




TTS

STTTTSS

TTSTT




TT

 .........1340.........1350.........1360.........1370.........1380.........1390.........1400
Sequence VDFPSTSSLTQIYGTFNRALMKLLPNLRSFADNLTDAMVEFYSESQKRFTPDIQAHYIYSPRELSRWDRA
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Known secondary structure (DSSP)




TTS
GGGTTSS
TTTSTT



 .........1410.........1420.........1430.........1440.........1450.........1460.........1470
Sequence LLEAIQTMDGCTLEGLVRLWAHEALRLFQDRLVETEEKEWTDKKIDEVALKHFPSVNLDALKRPILYSNW
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Known secondary structure (DSSP) TSS


TTTTT
SS
TTS
GGGG
SS



SS
 .........1480.........1490.........1500.........1510.........1520.........1530.........1540
Sequence LTPVNRSDLREYVKARLKVFYPLVLFNEVLDHILRIDRVFRQPQGHALLIGVSGGGKSVLSRFVAWMNGL
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Known secondary structure (DSSP)




TT





TSTT

STTSSTT
 .........1550.........1560.........1570.........1580.........1590.........1600.........1610
Sequence SIYTIKYKSSDFDDDLRMLLKRAGCKEEKICFIFDESNVLESSFLERMNTLLAGGEVPGLFEGEEFTALM
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Known secondary structure (DSSP)




TS


GGG
SSTS

TTSS
TTT
 .........1620.........1630.........1640.........1650.........1660.........1670.........1680
Sequence HACKETAQRNGLILDSEEELYKYFTSQVRRNLHVVFTMNPASPDFHNSPALFNRCVLDWFGEWSPEALFQ
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Known secondary structure (DSSP) TT




TTT


TTSTTTT

TSS

 .........1690.........1700.........1710.........1720.........1730.........1740.........1750
Sequence VGSEFTRNLDLENPQYIAPPVFIQEAEILMAIPPSHRDAVVSSLVYIHQTIGEANIRLLKRQGRQNYVTP
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Known secondary structure (DSSP) TTTS



TT







SS

SSS





 .........1760.........1770.........1780.........1790.........1800.........1810.........1820
Sequence RHYLDFINQVVLLINEKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQM
Predicted secondary structure
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Known secondary structure (DSSP)
 .........1830.........1840.........1850.........1860.........1870.........1880.........1890
Sequence VQDQQAAEIKQKDARELQVQLDVRNKEIAVQKVKAYADLPLREEVEQLENAANELKLKQDEIVATITALE
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Known secondary structure (DSSP)


 .........1900.........1910.........1920.........1930.........1940.........1950.........1960
Sequence KSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSENFNTQMSTVVGDVVLAS
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Known secondary structure (DSSP)
 .........1970.........1980.........1990.........2000.........2010.........2020.........2030
Sequence AFLAYIGFFDQNFRTDLMRKWMIRLDSVGIKFKSDLSVPSFLSKPEERLNWHANSLPSDELCIENAIMLK
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Known secondary structure (DSSP) TGGGS
T



TT

TS
TT

SSTT
 .........2040.........2050.........2060.........2070.........2080.........2090.........2100
Sequence RFNRYPLVIDPSGQAMEFLMNQYADKKITKTSFMKNLESALRFGCPLLVQDVESFMIFLFTRDPTAHFTP
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Known secondary structure (DSSP) S
SS

TTSTGGG






T











TT



 .........2110.........2120.........2130.........2140.........2150.........2160.........2170
Sequence DLCSRVTFVNFTVTPSSLQSQCLHEALKTERPDTHKKRSDLLKIQGEFQVKLRILEKSLLNALSQASGNI
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Known secondary structure (DSSP) TS




TTTTTTTSS
G
 .........2180.........2190.........2200.........2210.........2220.........2230.........2240
Sequence LDDDSVISTLETLKKETTEIALKVEETETVMQEISEVSALYNPMALSCSRVYFAMEELSQFHLYQFSLRA
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Known secondary structure (DSSP) GG
STGGGGSTT



 .........2250.........2260.........2270.........2280.........2290.........2300.........2310
Sequence FLDIFYNLLNNNPNLVDKKDPNERLVYLSKDIFSMTFNRVTRTLLNDDKLTFALQLTIISVKGTSNEIEE
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Known secondary structure (DSSP) SS
GGGSS


TTTS
GGGTTTTTSTT


 .........2320.........2330.........2340.........2350.........2360.........2370.........2380
Sequence SEWDFLLKGGDNLTSIKETIPQLDSLLSTTQQKWLICLRQQVPSFSKLVDHIQQNSSDWKQFFGKDQVGE
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Known secondary structure (DSSP) TTTTGGG




GGGTTT


GGGTTTT
SS
SS
 .........2390.........2400.........2410.........2420.........2430.........2440.........2450
Sequence PIIPESWIVAQAQLSNQQSTIVSNFRKILLMKAFHSDRVLQYSHSFVCSVFGEDFLNTLDMANIVEKEVK
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Known secondary structure (DSSP)



TTSS



GGGS
TTTT



SS
 .........2460.........2470.........2480.........2490.........2500.........2510.........2520
Sequence SSSPLLLCSVPGYDASSKVDDLALQLHKQYKSFAIGSPEGFELAEKSIYAAAKSGTWVLLKNIHLAPQWL
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Known secondary structure (DSSP) TTS


TT


T





BTTST

B
GGG
TTT
 .........2530.........2540.........2550.........2560.........2570.........2580.........2590
Sequence VQLEKKLHSLSPHPSFRLFMTSEIHPALPANLLRMSNVFSYENPPGVKANLLHTFIGIPATRMDKQPAER
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Known secondary structure (DSSP) T



TT


S
TTS
TS

B


SSTTS
TSSST
 .........2600.........2610.........2620.........2630.........2640.........2650.........2660
Sequence SRIYFLLAWFHAIIQERLRYIPLGWTKFFEFNDADLRGALDSIDYWVDLYSKGRSNIDPDKIPWIAVRTI
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Known secondary structure (DSSP) GGGGTTTS
SS




STT
S


TTTS
 .........2670.........2680.........2690.........2700.........2710.........2720.........2730
Sequence LGSTIYGGRIDNEFDMRLLYSFLEQLFTPSAFNPDFPLVPSIGLSVPEGTTRAHFMKWIEALPEISTPIW
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Known secondary structure (DSSP) TTTSTT

SSSSSGGGGSSS
GGGT



SSTTS
S


GGG
 .........2740.........2750.........2760.........2770.........2780.........2790.........2800
Sequence LGLPENAESLLLSNKARKMINDLQKMQSSEEDSSSSEDKGKAKPLFRCFEREISTGGKLVKKITNDLANL
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Known secondary structure (DSSP) GTS
TTTTT




 .........2810.........2820.........2830.........2840.........2850.........2860.........2870
Sequence LKWYSVPETISLSVWISDFSKRMQQLSEISESVWLGGLLNPEAYITATRQSASQLNGRLHASASFNVKGM
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Known secondary structure (DSSP)


S


SS




GGGSS
T



B



S
 .........2880.........2890.........2900.........2910.........2920.........2930.........2940
Sequence ALEGAVWNNDQLTPTDILSTPISIATLTWKDPIFNNSSSKLSVPVYLNETRSELLFSIDLPYDQSTSKQN
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Known secondary structure (DSSP) S

SSS

SSS








TTSGGGSSTT


B
TTS
 .........2950....
Sequence WYQRSVSISSWKSD
Predicted secondary structure



SS confidence













Known secondary structure (DSSP) TTT
S




Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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