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  Protein Homology/analogY Recognition Engine V 2.2
 

Fold library entry viewer: c3vi3D_

Fold library idPDB HeaderMoleculeTitle
c3vi3D_PDB header: cell adhesion/immune systemChain: D: PDB Molecule: integrin beta-1;PDBTitle: crystal structure of alpha5beta1 integrin headpiece (ligand-free form)


Added to library: Sat Feb 25 11:50:35 2012
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence NRCLKANAKSCGECIQAGPNCGWCTNSTFRCDDLEALKKKGCPPDDIENPRGSKDIKKNKNVTNRSKGTA
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Known secondary structure (DSSP)

TTT


SSSTT
SSB

S





BSSSS

TTT










TT
TT
 .........80.........90.........100.........110.........120.........130.........140
Sequence EKLKPEDIHQIQPQQLVLRLRSGEPQTFTLKFKRAEDYPIDLYYLMDLSYSMKDDLENVKSLGTDLMNEM
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TTT




TT



S



BGGGTTT
 .........150.........160.........170.........180.........190.........200.........210
Sequence RRITSDFRIGFGSFVEKTVMPYISTTPAKLRNPCTSEQNCTTPFSYKNVLSLTNKGEVFNELVGKQRISG
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Known secondary structure (DSSP) TT
SS


SSTTTS

S

S
TTS





SS
TT


B
 .........220.........230.........240.........250.........260.........270.........280
Sequence NLDSPEGGFDAIMQVAVCGSLIGWRNVTRLLVFSTDAGFHFAGDGKLGGIVLPNDGQCHLENNMYTMSHY
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SSSSB

T

SSSS
B

TTGGGGGT

S



S

BSSSBB

TTT
 .........290.........300.........310.........320.........330.........340.........350
Sequence YDYPSIAHLVQKLSENNIQTIFAVTEEFQPVYKELKNLIPKSAVGTLSANSSNVIQLIIDAYNSLSSEVI
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Known secondary structure (DSSP) S



TTGGGSTT
TT
TTT
 .........360.........370.........380.........390.........400.........410.........420
Sequence LENGKLSEGVTISYKSYCKNGVNGTGENGRKCSNISIGDEVQFEISITSNKCPKKDSDSFKIRPLGFTEE
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TT

STT

GGGGG



TT


S


SS
TT



 .........430..
Sequence VEVILQYICECE
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Known secondary structure (DSSP)
S


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction
Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960
 
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