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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c3v8vB_

Fold library idPDB HeaderMoleculeTitle
c3v8vB_PDB header: transferaseChain: B: PDB Molecule: ribosomal rna large subunit methyltransferase l;PDBTitle: crystal structure of bifunctional methyltransferase ycby (rlmlk) from2 escherichia coli, sam binding


Added to library: Sat Mar 3 12:00:49 2012
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence MNSLFASTARGLEELLKTELENLGAVECQVVQGGVHFKGDTRLVYQSLMWSRLASRIMLPLGECYSDLDL
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Known secondary structure (DSSP)


TT
TT

SS


SS
S





 .........80.........90.........100.........110.........120.........130.........140
Sequence YLGVQAINWTEMFNPGATFAVHRNSQYGAMKVKDAIVDAFTRPRPNVDRDAPDIRVNVWIALDLSGDGLH
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Known secondary structure (DSSP) TS
B
TT



TTTT







SS
S


SSSS
TT
 .........150.........160.........170.........180.........190.........200.........210
Sequence LRGYRDAPIKETLAAAIVMRSGWQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEA
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Known secondary structure (DSSP)

SS



S
T


TTS
TT
TT
TT

TTTT



SSTTBTT

 .........220.........230.........240.........250.........260.........270.........280
Sequence IWQEVKAEAQTRARKGLAEYSSHFYGSDSDARVIQRARTNARLAGIGELITFEVKDVAQLTNPLPKGPYG
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Known secondary structure (DSSP)



S
TT
GGG

GGG


SSTTS


 .........290.........300.........310.........320.........330.........340.........350
Sequence TVLSNPPYSEPALIALHSLLGRIMKNQFGGWNLSLFSASPDLLSCLQLRADKQYKAKNGPLDCVQKNYHV
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TT
SSTTTGGGG




TT
 .........360.........370.........380.........390.........400.........410.........420
Sequence AESEDYTNRLRKNLKKFEKWARQEGIECYRLYDADLPEYNVAVDRYADWVVVQEYAHKARQRLFDIIAAT
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Known secondary structure (DSSP)



S
BSS
STTS
TT


 .........430.........440.........450.........460.........470.........480.........490
Sequence ISVLGIAPNKLVLKTRKGEFLEVTEYNAHLWVNLTDYLDTGLFLDHRIARRMLGQMSKGKDFLNLFSYTG
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Known secondary structure (DSSP) T

GGG







TT
SSSSSS
S

GGG
TT
S
TT
 .........500.........510.........520.........530.........540.........550.........560
Sequence SATVHAGLGGARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDLIFIDPPTFS
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Known secondary structure (DSSP) TT
SS
TTT

STTS







S
 .........570.........580.........590.........600.........610.........620.........630
Sequence NAFDVQRDHLALMKDLKRLLRAGGTIMFSNNKRGFRMDLDGLAKLGLKAQEITQKTLSQDFARNRQIHNC
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Known secondary structure (DSSP)



TT



TTTT
TTTT

SSSTT
S


 ......
Sequence WLITAA
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SS confidence





Known secondary structure (DSSP)


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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