PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c3v7oB_

Fold library id	PDB Header	Molecule	Title
c3v7oB_	PDB header: transcription	Chain: B: PDB Molecule: minor nucleoprotein vp30;	PDBTitle: crystal structure of the c-terminal domain of ebola virus vp30 (strain2 reston-89)

Links to external resources
Added to library: Wed Jan 9 20:15:45 2013

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence E T H I N L K V S D G S S E I F F K I K K T T P L R R L M E A F A K R Q G K E M D S L R F L Y D G I R I Q A D Q T P E D L D M E D N D I I E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
T T S
T T T
G G G T T
T T
T T T T T
T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence A H R E Q I G G L T L A V L L Q I A E H W A T R D L R Q I E D S K L R A L L T L C A V L T R K F S K S Q L G L L C E T H L R H E G L G Q D Q

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
T
T T S S
T T S
G G G T
G G G

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . .

Sequence A D S V L E V Y Q R L H S D K G G N F E A A L W Q Q W D R Q S L I M F I S A F L N I A L Q I P C E S S S V V V S G L A T L Y P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
T T S S
T T S
S S
G G G G G

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	E	T	H	I	N	L	K	V	S	D	G	S	S	E	I	F	F	K	I	K	K	T	T	P	L	R	R	L	M	E	A	F	A	K	R	Q	G	K	E	M	D	S	L	R	F	L	Y	D	G	I	R	I	Q	A	D	Q	T	P	E	D	L	D	M	E	D	N	D	I	I	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)											S	S									T	T	S		T											T	T			G	G	G						T	T					T	T			T	T	T	T	T			T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	A	H	R	E	Q	I	G	G	L	T	L	A	V	L	L	Q	I	A	E	H	W	A	T	R	D	L	R	Q	I	E	D	S	K	L	R	A	L	L	T	L	C	A	V	L	T	R	K	F	S	K	S	Q	L	G	L	L	C	E	T	H	L	R	H	E	G	L	G	Q	D	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							S																T			T	T	S	S																	T	T	S		G	G	G													T			G	G	G
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
Sequence	A	D	S	V	L	E	V	Y	Q	R	L	H	S	D	K	G	G	N	F	E	A	A	L	W	Q	Q	W	D	R	Q	S	L	I	M	F	I	S	A	F	L	N	I	A	L	Q	I	P	C	E	S	S	S	V	V	V	S	G	L	A	T	L	Y	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)													T		T	T	S										S																	T	T	S		S	S								G	G	G	G	G