PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3ufxG_

Fold library id	PDB Header	Molecule	Title
c3ufxG_	PDB header: ligase	Chain: G: PDB Molecule: succinyl-coa synthetase beta subunit;	PDBTitle: thermus aquaticus succinyl-coa synthetase in complex with gdp-mn2+

Links to external resources
Added to library: Sat Jun 30 13:38:56 2012

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence M N L H E Y Q A K E I L A R Y G V P V P P G K V A Y T P E E A K R I A E E F G K R V V I K A Q V H V G G R G K A G G V K L A D T P Q E A Y E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
B
T T
S S T S
S S S
T T T T T
S S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence K A Q A I L G M N I K G L T V K K V L V A E A V D I A K E Y Y A G L I L D R A K K R V V L M L S K E G G V D I E E V A A E R P E A I H K F W

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
T T
T T T T S
S S
G G G

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence I D P H K G F R P F E A R E M V K R A G L E G N L N K L A Q V L V A L Y R A Y E G V D A S I A E I N P L V V T T D G G I V A A D A K I V L D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
B T T T B
T
S
T T T T S
S S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence D N A L F R H P D L A E L R E V E A E H P L E V E A S N Y G F A Y V K L D G N I G I I G N G A G L V M Y T L D L V N R V G G K P A N F L D I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) G G G G G G
T T
S S T T
S S S S S T T
B S

. . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . . . 340 . . . . . . . . . 350

Sequence G G G A K A D V V Y N A L K V V L K D P D V K G V F I N I F G G I T R A D E V A K G V I R A L E E G L L T K P V V M R V A G T A E E E A K K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
T
T T
S T T
S
S T

. . . . . . . . . 360 . . . . . . . . .

Sequence L L K P V Y M Y P T S I E A A K V T V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
S S T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	M	N	L	H	E	Y	Q	A	K	E	I	L	A	R	Y	G	V	P	V	P	P	G	K	V	A	Y	T	P	E	E	A	K	R	I	A	E	E	F	G	K	R	V	V	I	K	A	Q	V	H	V	G	G	R	G	K	A	G	G	V	K	L	A	D	T	P	Q	E	A	Y	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		B													T	T										S	S												T	S									S	S	S		T	T	T	T	T						S	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	K	A	Q	A	I	L	G	M	N	I	K	G	L	T	V	K	K	V	L	V	A	E	A	V	D	I	A	K	E	Y	Y	A	G	L	I	L	D	R	A	K	K	R	V	V	L	M	L	S	K	E	G	G	V	D	I	E	E	V	A	A	E	R	P	E	A	I	H	K	F	W
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						T	T				T	T																										T	T	T	T								S			S	S										G	G	G
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	I	D	P	H	K	G	F	R	P	F	E	A	R	E	M	V	K	R	A	G	L	E	G	N	L	N	K	L	A	Q	V	L	V	A	L	Y	R	A	Y	E	G	V	D	A	S	I	A	E	I	N	P	L	V	V	T	T	D	G	G	I	V	A	A	D	A	K	I	V	L	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		B	T	T	T	B														T			S																			T	T													T	T	S					S	S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	D	N	A	L	F	R	H	P	D	L	A	E	L	R	E	V	E	A	E	H	P	L	E	V	E	A	S	N	Y	G	F	A	Y	V	K	L	D	G	N	I	G	I	I	G	N	G	A	G	L	V	M	Y	T	L	D	L	V	N	R	V	G	G	K	P	A	N	F	L	D	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	G	G	G	G	G	G						T	T						S	S									T	T							S	S	S						S	S														T	T			B	S
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Sequence	G	G	G	A	K	A	D	V	V	Y	N	A	L	K	V	V	L	K	D	P	D	V	K	G	V	F	I	N	I	F	G	G	I	T	R	A	D	E	V	A	K	G	V	I	R	A	L	E	E	G	L	L	T	K	P	V	V	M	R	V	A	G	T	A	E	E	E	A	K	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		S																T		T	T															S													T	T				S											S					T
	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.
Sequence	L	L	K	P	V	Y	M	Y	P	T	S	I	E	A	A	K	V	T	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T								S	S								T