PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3u5iG_

Fold library id	PDB Header	Molecule	Title
c3u5iG_	PDB header: ribosome	Chain: G: PDB Molecule: 60s ribosomal protein l8-a;	PDBTitle: the structure of the eukaryotic ribosome at 3.0 a resolution. this2 entry contains proteins of the 60s subunit, ribosome b

Links to external resources
Added to library: Wed Jan 9 18:20:59 2013

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence N P L T H S T P K N F G I G Q A V Q P K R N L S R Y V K W P E Y V R V Q R Q K K I L S I R L K V P P T I A Q F Q Y T L D R N T A A E T F K L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
S T T S S
G G G
T T S S
B
T T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence F N K Y R P E T A A E K K E R L T K E A A A V A E G K S K Q D A S P K P Y A V K Y G L N H V V A L I E N K K A K L V L I A N D V D P I E L V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) G G G
T T S S T T S
S S
T T
S S
S S T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence V F L P A L C K K M G V P Y A I V K G K A R L G T L V N Q K T S A V A A L T E V R A E D E A A L A K L V S T I D A N F A D K Y D E V K K H W

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
T T T T S S
S
G G G T T T T T T

. . . . . . . . . 220 . . . . . . . . . 230 .

Sequence G G G I L G N K A Q A K M D K R A K N S D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) B
T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	N	P	L	T	H	S	T	P	K	N	F	G	I	G	Q	A	V	Q	P	K	R	N	L	S	R	Y	V	K	W	P	E	Y	V	R	V	Q	R	Q	K	K	I	L	S	I	R	L	K	V	P	P	T	I	A	Q	F	Q	Y	T	L	D	R	N	T	A	A	E	T	F	K	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S	S								S	T	T	S	S								G	G	G																	T	T	S	S		B						T	T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	F	N	K	Y	R	P	E	T	A	A	E	K	K	E	R	L	T	K	E	A	A	A	V	A	E	G	K	S	K	Q	D	A	S	P	K	P	Y	A	V	K	Y	G	L	N	H	V	V	A	L	I	E	N	K	K	A	K	L	V	L	I	A	N	D	V	D	P	I	E	L	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		G	G	G																				T	T	S	S	T	T	S		S	S																			T	T			S						S			S	S	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	V	F	L	P	A	L	C	K	K	M	G	V	P	Y	A	I	V	K	G	K	A	R	L	G	T	L	V	N	Q	K	T	S	A	V	A	A	L	T	E	V	R	A	E	D	E	A	A	L	A	K	L	V	S	T	I	D	A	N	F	A	D	K	Y	D	E	V	K	K	H	W
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																		S							T	T	T	T	S	S			S									G	G	G															T	T	T	T					T	T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
Sequence	G	G	G	I	L	G	N	K	A	Q	A	K	M	D	K	R	A	K	N	S	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	B																			T