PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c3u4tA_

Fold library id	PDB Header	Molecule	Title
c3u4tA_	PDB header: structural genomics, unknown function	Chain: A: PDB Molecule: tpr repeat-containing protein;	PDBTitle: crystal structure of the c-terminal part of the tpr repeat-containing2 protein q11ti6_cyth3 from cytophaga hutchinsonii. northeast3 structural genomics consortium target chr11b.

Links to external resources
Added to library: Wed Jan 9 22:19:38 2013

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence V E F R Y A D F L F K N N N Y A E A I E V F N K L E A K K Y N S P Y I Y N R R A V C Y Y E L A K Y D L A Q K D I E T Y F S K V N A T K A K S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T
T T
S T T T T
T T S
T T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence A D F E Y Y G K I L X K K G Q D S L A I Q Q Y Q A A V D R D T T R L D X Y G Q I G S Y F Y N K G N F P L A I Q Y X E K Q I R P T T T D P K V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S T T
T T T
G G G
S S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence F Y E L G Q A Y Y Y N K E Y V K A D S S F V K V L E L K P N I Y I G Y L W R A R A N A A Q D P D T K Q G L A K P Y Y E K L I E V C A P G G A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S T T
S T T
S S
T T G G G G G

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . .

Sequence K Y K D E L I E A N E Y I A Y Y Y T I N R D K V K A D A A W K N I L A L D P T N K K A I D G L K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) G G T T
T T

Download: PDB structure FASTA sequence
Hidden Markov model

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	V	E	F	R	Y	A	D	F	L	F	K	N	N	N	Y	A	E	A	I	E	V	F	N	K	L	E	A	K	K	Y	N	S	P	Y	I	Y	N	R	R	A	V	C	Y	Y	E	L	A	K	Y	D	L	A	Q	K	D	I	E	T	Y	F	S	K	V	N	A	T	K	A	K	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)											T	T	T															T	T				S	T	T											T	T														T	T	S		T	T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	A	D	F	E	Y	Y	G	K	I	L	X	K	K	G	Q	D	S	L	A	I	Q	Q	Y	Q	A	A	V	D	R	D	T	T	R	L	D	X	Y	G	Q	I	G	S	Y	F	Y	N	K	G	N	F	P	L	A	I	Q	Y	X	E	K	Q	I	R	P	T	T	T	D	P	K	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)													T	T																S	T	T		T													T	T										G	G	G			S	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	F	Y	E	L	G	Q	A	Y	Y	Y	N	K	E	Y	V	K	A	D	S	S	F	V	K	V	L	E	L	K	P	N	I	Y	I	G	Y	L	W	R	A	R	A	N	A	A	Q	D	P	D	T	K	Q	G	L	A	K	P	Y	Y	E	K	L	I	E	V	C	A	P	G	G	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)											T	T																S	T	T																S	T	T		S	S		T	T												G	G	G	G	G
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
Sequence	K	Y	K	D	E	L	I	E	A	N	E	Y	I	A	Y	Y	Y	T	I	N	R	D	K	V	K	A	D	A	A	W	K	N	I	L	A	L	D	P	T	N	K	K	A	I	D	G	L	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	G	G																		T	T																	T	T