PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3u21B_

Fold library id	PDB Header	Molecule	Title
c3u21B_	PDB header: transcription regulation, dna binding	Chain: B: PDB Molecule: nuclear factor related to kappa-b-binding protein;	PDBTitle: crystal structure of a fragment of nuclear factor related to kappa-b-2 binding protein (residues 370-495) (nfrkb) from homo sapiens at 2.183 a resolution

Links to external resources
Added to library: Sat Nov 5 19:09:53 2011

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence L G I N E I S S S F F S L L L E I L L L E S Q A S L P X L E E R V L D W Q S S P A S S L N S W F S A A P N W A E L V L P A L Q Y L A G E S R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
S
S
S S
S G G G G G S T T G G G
S
G G G G T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . .

Sequence S F S P F V E F E T Q Q W L L S Q D N E E L A A L F Q L W L E T D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
T T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	L	G	I	N	E	I	S	S	S	F	F	S	L	L	L	E	I	L	L	L	E	S	Q	A	S	L	P	X	L	E	E	R	V	L	D	W	Q	S	S	P	A	S	S	L	N	S	W	F	S	A	A	P	N	W	A	E	L	V	L	P	A	L	Q	Y	L	A	G	E	S	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S		S			S														S	S																S	G	G	G	G	G	S	T	T	G	G	G		S		G	G	G	G									T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.
Sequence	S	F	S	P	F	V	E	F	E	T	Q	Q	W	L	L	S	Q	D	N	E	E	L	A	A	L	F	Q	L	W	L	E	T	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					S												T	T	T