PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c3u1lA_

Fold library id	PDB Header	Molecule	Title
c3u1lA_	PDB header: splicing	Chain: A: PDB Molecule: pre-mrna-splicing factor cwc2;	PDBTitle: structure of the mrna splicing complex component cwc2

Links to external resources
Added to library: Sat Nov 19 19:45:45 2011

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence S W R D K S A K V Q V K E S E L P S S I P A Q T G L T F N I W Y N K W S Q G F A G N T R F V S P F A L Q P Q L H S G K T R G D N D G Q L F F

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
G G G S B
S
G G G S
S S
T T S T T T S S S S S
S
B B
T T
S B

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence C L F F A K G M C C L G P K C E Y L H H I P D E E D I G K L A L R T E V L D C F G R E K F A D Y R R K K N K T L Y V G G I D G A L N S K H L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
S
G G G
S S B B S
S S B
T T S S B
G G G T
T T G G G T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence K P A Q I E S R I R F V F S R L G D I D R I R Y V E S K N C G F V K F K Y Q A N A E F A K E A M S N Q T L L L P S D K E W D D R R E G T G L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S
G G G T S S T T
T T S T T G G G G G G S

. . . . . .

Sequence L V K W A N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

Download: PDB structure FASTA sequence
Hidden Markov model

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	S	W	R	D	K	S	A	K	V	Q	V	K	E	S	E	L	P	S	S	I	P	A	Q	T	G	L	T	F	N	I	W	Y	N	K	W	S	Q	G	F	A	G	N	T	R	F	V	S	P	F	A	L	Q	P	Q	L	H	S	G	K	T	R	G	D	N	D	G	Q	L	F	F
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		G	G	G	S	B					S		G	G	G	S		S	S				T	T	S	T	T											T	S	S	S	S	S					S										B	B						T	T			S	B
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	C	L	F	F	A	K	G	M	C	C	L	G	P	K	C	E	Y	L	H	H	I	P	D	E	E	D	I	G	K	L	A	L	R	T	E	V	L	D	C	F	G	R	E	K	F	A	D	Y	R	R	K	K	N	K	T	L	Y	V	G	G	I	D	G	A	L	N	S	K	H	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						T	T			S		G	G	G		S	S	B	B	S															S	S	B		T	T	S	S	B		G	G	G	T													T	T	G	G	G	T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	K	P	A	Q	I	E	S	R	I	R	F	V	F	S	R	L	G	D	I	D	R	I	R	Y	V	E	S	K	N	C	G	F	V	K	F	K	Y	Q	A	N	A	E	F	A	K	E	A	M	S	N	Q	T	L	L	L	P	S	D	K	E	W	D	D	R	R	E	G	T	G	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)															T	T	S									G	G	G	T							S	S												T	T						T	T	S	T	T	G	G	G	G	G	G	S
	.	.	.	.	.	.
Sequence	L	V	K	W	A	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)