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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c3u07A_

Fold library idPDB HeaderMoleculeTitle
c3u07A_PDB header: structural genomics, unknown functionChain: A: PDB Molecule: uncharacterized protein vpa0106;PDBTitle: crystal structure of the vpa0106 protein from vibrio parahaemolyticus.2 northeast structural genomics consortium target vpr106.


Added to library: Thu Jan 10 04:21:35 2013
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence TNVDLAEDAYIYGYSIDEAYKFFYHTAVENNYPLNEFQPTINNDTLHLXGWLDVAAEPVIVSVPDXDEGR
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Known secondary structure (DSSP)
TTTTT

SSSB




SS
SSS




TT
 .........80.........90.........100.........110.........120.........130.........140
Sequence YWILHTXDXGHYTNAAFSSRTRGTKGGQFXFAAQDWQGEVPASVDEVVRVDSNLVKLXGRIXAVNDEDAK
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Known secondary structure (DSSP)
TTS
TT

TT

S


TT

SBS

S
 .........150.........160.........170.........180.........190.........200.........210
Sequence VALNYXDQWNIRTLSEYLGKNGPKPVQRTYPDPKKSTWLERVNFVLCDGSXGNADKQWLDKYQSIGVEPC
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Known secondary structure (DSSP) TT
T












TTTS
SBSTGGGT

TT
 .........220.........230.........240.........250.........260.........270.........280
Sequence KTDFTPEQLKLAKVGEKKGXEHLVELAPKXTDARTLLGTRDTLGDAPRDIFAEGTYLGQWGLPPIEASYR
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Known secondary structure (DSSP)




GGG


GGGTS

TTS
TT


TTT
 .........290.........300.........310.........320.........330.........340.........350
Sequence KSDFDSIGQKLDGSKHDYVXRFKAPNVSEFWSVTIYGNDNRLXAKNDLNRHSRGDRTXKADKDGYYTIYX
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Known secondary structure (DSSP)
B
TTS
B
BTTT



TTTSSB


TT


TTT



TTS
 .........360.........370.........380.........390........
Sequence SANEKGRADDPNFLPVPEKPFYAIXRFYGADDAIQSGEYQXPEIKVVK
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Known secondary structure (DSSP) S

TT
TT
TT

SSB
T
S






Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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