Standard Mode | Switch to Expert Mode | Login to view past jobsRetrieve Phyre Job Id
 
Subscribe to Phyre at Google Groups
Email:
Visit Phyre at Google Groups
  Protein Homology/analogY Recognition Engine V 2.2
 

Fold library entry viewer: c3tj1A_

Fold library idPDB HeaderMoleculeTitle
c3tj1A_PDB header: transcriptionChain: A: PDB Molecule: rna polymerase i-specific transcription initiation factorPDBTitle: crystal structure of rna polymerase i transcription initiation factor2 rrn3


Added to library: Sat Oct 1 10:13:25 2011
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence VFSAAMYSRFVKSALDDLDKNDSTQIGIIANQVALPSKNPERINDKNLNILLDILSSNINRIESSRGTFL
Predicted secondary structure



















SS confidence





































































Known secondary structure (DSSP)


TT

S
TT
TTS

TGGGG
SGGG
 .........80.........90.........100.........110.........120.........130.........140
Sequence IQSIINFEKWWELPPHTLSKYIYFIKILCSSIPKWWQDVSMILVSCFILPIKQTVCHHDMLKYFLRMIPS
Predicted secondary structure



















SS confidence





































































Known secondary structure (DSSP) T
TTGGGS

GGGGGGS

GG
 .........150.........160.........170.........180.........190.........200.........210
Sequence SMGFIDTYLAKFFPNKNDTRRKLVNYTSNLLKLRGYCSELGFQIWSLLIEKIISIDVELQNELDELDTQG
Predicted secondary structure























SS confidence





































































Known secondary structure (DSSP) GT


TTS

GGG

GG
 .........220.........230.........240.........250.........260.........270.........280
Sequence IKELSTKLDSILTLVSTHVEEQVTPESLESGEGVGVFNTLTTLFKTHVLPTYYTRSIQYIMFHVSQQQLE
Predicted secondary structure











SS confidence





































































Known secondary structure (DSSP) GS
SSTTTTTS
S
SSTTTTS
 .........290.........300.........310.........320.........330.........340.........350
Sequence LMDSFLVTLIDISFAVNEAAEKKIKSLQYLGSYIARAKKLSRTQIIFVASYLTSWLNRYVIEREEEVDQR
Predicted secondary structure















SS confidence





































































Known secondary structure (DSSP)
SSS
BTT

GGGTTSS
 .........360.........370.........380.........390.........400.........410.........420
Sequence GGMERFKHFYAAFQALCYIFCFRHNIFRDTDGNWECELDKFFQRMVISKFNPLKFCNENVMLMFARIAQQ
Predicted secondary structure














SS confidence





































































Known secondary structure (DSSP) S
GGGGGGGGB
TTS
BGGGSTT
S
 .........430.........440.........450.........460.........470.........480...
Sequence ESVAYCFSIIENNNNERLRGSSWSLATRQQFIDLQSYFPYDPLFLKNYKILMKEYYIEWSEAS
Predicted secondary structure

































SS confidence






























































Known secondary structure (DSSP) TTS









TTS


SGGGB



Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


Phyre is now FREE for commercial users!

All images and data generated by Phyre2 are free to use in any publication with acknowledgement

Accessibility Statement
Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction
Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960
 
© Structural Bioinformatics Group, Imperial College, London
Michael Sternberg  
Disclaimer
Terms and Conditions
Structural Biology Group logo Imperial logo
BBSRC logo
Phyre2 is part of Genome3D