PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3tcqA_

Fold library id	PDB Header	Molecule	Title
c3tcqA_	PDB header: viral protein	Chain: A: PDB Molecule: matrix protein vp40;	PDBTitle: crystal structure of matrix protein vp40 from ebola virus sudan

Links to external resources
Added to library: Sat Oct 6 13:05:35 2012

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence M D T P S N S M R P V A D D N I D H T S H T P N G V A S A F I L E A T V N V I S G P K V L M K Q I P I W L P L G I A D Q K T Y S F D S T T A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
B
T T
G G G T
S T T
T T
S S S S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence A I M L A S Y T I T H F G K A N N P L V R V N R L G Q G I P D H P L R L L R M G N Q A F L Q E F V L P P V Q L P Q Y F T F D L T A L K L V T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S
S S S
S
T T
S S S S
S S
S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence Q P L P A A T W T D R P G L S F H P K L R P V L L P G T A P D K I Q T I V N L M Q D F K I V P I D P A K S I I G I E V P E L L V H K L T G K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T B
S S T T S
G G G
G G G T

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . .

Sequence K M S Q K N G Q P I I P V L L P K Y I G P G D L T M V I T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
S
T T
T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	M	D	T	P	S	N	S	M	R	P	V	A	D	D	N	I	D	H	T	S	H	T	P	N	G	V	A	S	A	F	I	L	E	A	T	V	N	V	I	S	G	P	K	V	L	M	K	Q	I	P	I	W	L	P	L	G	I	A	D	Q	K	T	Y	S	F	D	S	T	T	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								B						T	T			G	G	G	T		S	T	T																T	T																		S	S	S	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	A	I	M	L	A	S	Y	T	I	T	H	F	G	K	A	N	N	P	L	V	R	V	N	R	L	G	Q	G	I	P	D	H	P	L	R	L	L	R	M	G	N	Q	A	F	L	Q	E	F	V	L	P	P	V	Q	L	P	Q	Y	F	T	F	D	L	T	A	L	K	L	V	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				S	S										S	S	S									S				T	T		S	S						S										S		S	S				S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	Q	P	L	P	A	A	T	W	T	D	R	P	G	L	S	F	H	P	K	L	R	P	V	L	L	P	G	T	A	P	D	K	I	Q	T	I	V	N	L	M	Q	D	F	K	I	V	P	I	D	P	A	K	S	I	I	G	I	E	V	P	E	L	L	V	H	K	L	T	G	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					T	T	B									S	S	T	T	S																				G	G	G								G	G	G	T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Sequence	K	M	S	Q	K	N	G	Q	P	I	I	P	V	L	L	P	K	Y	I	G	P	G	D	L	T	M	V	I	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					S	S		S									T	T				T	T