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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c3tb8A_

Fold library idPDB HeaderMoleculeTitle
c3tb8A_PDB header: apoptosisChain: A: PDB Molecule: protein nef;PDBTitle: crystal structure of full-length myristoylated hiv-1 nef


Added to library: Wed Jan 9 17:10:52 2013
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence GGKWSKSSVIGWPAVRERMRRAEPAADGVGAASRDLEKHGAITSSNTAANNAACAWLEAQEEEKVGFPVT
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Known secondary structure (DSSP)


TTS

SSSS

SSTTS
S

SSS

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STT
B



TTSSSS



STT






SS
 .........80.........90.........100.........110.........120.........130.........140
Sequence PQVPLRPMTYKAAVDLSHFLKEKGGLEGLIHSQRRQDILDLWIYHTQGYFPDWQNYTPGPGIRYPLTFGW
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Known secondary structure (DSSP)





S

TTTTT



SS


SSSSGGGTTTT



STTS

SSSSS
S

TTT
 .........150.........160.........170.........180.........190.........200..
Sequence CYKLVPVEPDKVEEANKGENTSLLHPVSLHGMDDPEREVLEWRFDSRLAFHHVARELHPEYF
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Known secondary structure (DSSP)




SSSS


SS
TTT
SS

S

SSSS





SS






S
SSSS

TTSS





Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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