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Protein Homology/analogY Recognition Engine V 2.2 |
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Fold library id | PDB Header | Molecule | Title |
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c3tb8A_ | PDB header: apoptosis | Chain: A: PDB Molecule: protein nef; | PDBTitle: crystal structure of full-length myristoylated hiv-1 nef |
Added to library: Wed Jan 9 17:10:52 2013 | |
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Links to external resources | |
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  | 1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 |
Sequence | G | G | K | W | S | K | S | S | V | I | G | W | P | A | V | R | E | R | M | R | R | A | E | P | A | A | D | G | V | G | A | A | S | R | D | L | E | K | H | G | A | I | T | S | S | N | T | A | A | N | N | A | A | C | A | W | L | E | A | Q | E | E | E | K | V | G | F | P | V | T |
Predicted secondary structure | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | |||||||||||||||||||||||||||||||||||||||||||||||
SS confidence | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Known secondary structure (DSSP) | T | T | S | S | S | S | S | S | S | T | T | S | S | S | S | S | S | S | S | S | S | B | S | T | T | B | T | T | S | S | S | S | S | T | T | S | S |   | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 |
Sequence | P | Q | V | P | L | R | P | M | T | Y | K | A | A | V | D | L | S | H | F | L | K | E | K | G | G | L | E | G | L | I | H | S | Q | R | R | Q | D | I | L | D | L | W | I | Y | H | T | Q | G | Y | F | P | D | W | Q | N | Y | T | P | G | P | G | I | R | Y | P | L | T | F | G | W |
Predicted secondary structure | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | |||||||||||||||||||||||||||||||||||||||
SS confidence | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Known secondary structure (DSSP) | S | ![]() | ![]() | ![]() | ![]() | ![]() | T | ![]() | ![]() | ![]() | ![]() | T | T | T | T | S | S | S | ![]() | ![]() | ![]() | ![]() | S | S | S | G | G | G | T | T | T | T | S | T | T | S | S | S | S | S | S | S | T | T | T |   | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . |
Sequence | C | Y | K | L | V | P | V | E | P | D | K | V | E | E | A | N | K | G | E | N | T | S | L | L | H | P | V | S | L | H | G | M | D | D | P | E | R | E | V | L | E | W | R | F | D | S | R | L | A | F | H | H | V | A | R | E | L | H | P | E | Y | F | ||||||||
Predicted secondary structure | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ||||||||||||||||||||||||||||||||||||||||||||||
SS confidence | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Known secondary structure (DSSP) | S | S | S | S | S | S | T | T | T | S | S | S | S | S | S | S | S | S | S | S | S | S | S | T | T | S | S |
Download: | PDB structure | FASTA sequence |
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