PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3sy8C_

Fold library id	PDB Header	Molecule	Title
c3sy8C_	PDB header: transcription regulator	Chain: C: PDB Molecule: rocr;	PDBTitle: crystal structure of the response regulator rocr

Links to external resources
Added to library: Sat Jul 21 14:31:19 2012

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence N D L N V L V L E D E P F Q R L V A V T A L K K V V P G S I L E A A D G K E A V A I L E S C G H V D I A I C D L Q M S G M D G L A F L R H A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
S S T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence S L S G K V H S V I L S S E V D P I L R Q A T I S M I E C L G L N F L G D L G K P F S L E R I T A L L T R Y N A R R L P S V A D V V R G L D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
S S
G G G T T T
S S
T
T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence N G E F E A Y Y Q P K V A L D G G G L I G A E V L A R W N H P H L G V L P P S H F L Y V M E T Y N L V D K L F W Q L F S Q G L A T R R K L A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S S S S
T T T
S B
G G G T T

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence Q L G Q P I N L A F N V H P S Q L G S R A L A E N I S A L L T E F H L P P S S V M F E I T E T G L I S A P A S S L E N L V R L W I M G C G L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
T
T T T T
G G G S
T T T

. . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . . . 340 . . . . . . . . . 350

Sequence A M D D F G A G Y S S L D R L C E F P F S Q I K L D R T F V Q K M K T Q P R S C A V I S S V V A L A Q A L G I S L V V E G V E S D E Q R V R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
S
S S
S
S
T T T T
T

. . . . . . . . . 360 . . . . . . . . . 370 . . . . . . . . . 380

Sequence L I E L G C S I A Q G Y L F A R P M P E Q H F L D Y C S G S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
B T T T B
S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	N	D	L	N	V	L	V	L	E	D	E	P	F	Q	R	L	V	A	V	T	A	L	K	K	V	V	P	G	S	I	L	E	A	A	D	G	K	E	A	V	A	I	L	E	S	C	G	H	V	D	I	A	I	C	D	L	Q	M	S	G	M	D	G	L	A	F	L	R	H	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)											S																							S	S										T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	S	L	S	G	K	V	H	S	V	I	L	S	S	E	V	D	P	I	L	R	Q	A	T	I	S	M	I	E	C	L	G	L	N	F	L	G	D	L	G	K	P	F	S	L	E	R	I	T	A	L	L	T	R	Y	N	A	R	R	L	P	S	V	A	D	V	V	R	G	L	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				T								S	S				G	G	G										T	T	T									S	S															T														T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	N	G	E	F	E	A	Y	Y	Q	P	K	V	A	L	D	G	G	G	L	I	G	A	E	V	L	A	R	W	N	H	P	H	L	G	V	L	P	P	S	H	F	L	Y	V	M	E	T	Y	N	L	V	D	K	L	F	W	Q	L	F	S	Q	G	L	A	T	R	R	K	L	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T												S	S	S	S														T	T	T		S	B		G	G	G	T								T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	Q	L	G	Q	P	I	N	L	A	F	N	V	H	P	S	Q	L	G	S	R	A	L	A	E	N	I	S	A	L	L	T	E	F	H	L	P	P	S	S	V	M	F	E	I	T	E	T	G	L	I	S	A	P	A	S	S	L	E	N	L	V	R	L	W	I	M	G	C	G	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		T	T															T		T	T												T	T			G	G	G												S			T	T												T
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Sequence	A	M	D	D	F	G	A	G	Y	S	S	L	D	R	L	C	E	F	P	F	S	Q	I	K	L	D	R	T	F	V	Q	K	M	K	T	Q	P	R	S	C	A	V	I	S	S	V	V	A	L	A	Q	A	L	G	I	S	L	V	V	E	G	V	E	S	D	E	Q	R	V	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				S		S		S	S									S			S						T						T	T	T																			T
	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380
Sequence	L	I	E	L	G	C	S	I	A	Q	G	Y	L	F	A	R	P	M	P	E	Q	H	F	L	D	Y	C	S	G	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					T						B	T	T	T	B													S