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  Protein Homology/analogY Recognition Engine V 2.2
 

Fold library entry viewer: c3sbgA_

Fold library idPDB HeaderMoleculeTitle
c3sbgA_PDB header: splicingChain: A: PDB Molecule: pre-mrna-splicing factor 8;PDBTitle: crystal structure of a prp8 c-terminal fragment


Added to library: Sat Apr 21 12:23:33 2012
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence GAMNSSNYAELFNNDIKLFVDDTNVYRVTVHKTFEGNVATKAINGCIFTLNPKTGHLFLKIIHTSVWAGQ
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Known secondary structure (DSSP)

B
TTGGGGGGSSS

TTTS
TTS


TTT

GGGGTT
 .........80.........90.........100.........110.........120.........130.........140
Sequence KRLSQLAKWKTAEEVSALVRSLPKEEQPKQIIVTRKAMLDPLEVHMLDFPNIAIRPTELRLPFSAAMSID
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Known secondary structure (DSSP) SSS
TTTS
SSSGGGTTT
TTS
BSS

GGGGGGSS
 .........150.........160.........170.........180.........190.........200.........210
Sequence KLSDVVMKATEPQMVLFNIYDDWLDRISSYTAFSRLTLLLRALKTNEESAKMILLSDPTITIKSYHLWPS
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Known secondary structure (DSSP)

S
TTTTGGGTS

TSSTTS
B
TT
SSB
 .........220.........230.........240.........250.........260.........270.........280
Sequence FTDEQWITIESQMRDLILTEYGRKYNVNISALTQTEIKDIILGQSKNEWRKSAIANTLLYLRLKNIYVSA
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Known secondary structure (DSSP)

TTTTTS


GGG

T

TTGGGGGGS

 .........290.........300.........310.........320.........330.........340.........350
Sequence DDFVEEQNVYVLPKNLLKKFIEISDVKIQVAAFIYGMSAKDHPKVKEIKTVVLVPQLGHVGSVQISNIPD
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Known secondary structure (DSSP)



TTS
S
SSS

TT



SS





 .........360.........370.........380.........390.........400.........410.........420
Sequence IGDLPDTEGLELLGWIHTQTEELKFMAASEVATHSKLFADKKRDCIDISIFSTPGSVSLSAYNLTDEGYQ
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Known secondary structure (DSSP)
TTSTT
TT
SS

SS

SSS
TT
TT
 .........430.........440.........450.........460.........470.........480.........490
Sequence WGEENKDIMNVLSEGFEPTFSTHAQLLLSDRITGNFIIPSGNVWNYTFMGTAFNQEGDYNFKYGIPLEFY
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Known secondary structure (DSSP) TTTT

SS

TT

GGG
TTS

TTS

B
TT
GGG

TT








TT
 .......
Sequence NEMHRPV
Predicted secondary structure



SS confidence






Known secondary structure (DSSP)
TTSS


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction
Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960
 
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Michael Sternberg  
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