Standard Mode | Switch to Expert Mode | Login to view past jobsRetrieve Phyre Job Id
 
Subscribe to Phyre at Google Groups
Email:
Visit Phyre at Google Groups
  Protein Homology/analogY Recognition Engine V 2.2
 

Fold library entry viewer: c3s7xC_

Fold library idPDB HeaderMoleculeTitle
c3s7xC_PDB header: viral proteinChain: C: PDB Molecule: major capsid protein vp1;PDBTitle: unassembled washington university polyomavirus vp1 pentamer r198k2 mutant


Added to library: Mon Jul 4 03:59:21 2011
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence SHMGGVDVLAAVPLSEETEFKVELFVKPVIGNAEGTTPHYWSISSPLKTAEAANVTPDADTTVCYSLSQV
Predicted secondary structure


















































SS confidence





































































Known secondary structure (DSSP)

STT





TTT




TT
SS
B

SB





TT


GGGS
 .........80.........90.........100.........110.........120.........130.........140
Sequence APPDIPNECDMLIWELYRMETEVLVLPVLNAGILTTGGVGGIAGPQLYFWAVGGQPLDVLGLAPTEKYKG
Predicted secondary structure



























SS confidence





































































Known secondary structure (DSSP)












STTTB
TTSSB

SBS
SS



SSSS


 .........150.........160.........170.........180.........190.........200.........210
Sequence PAQYTVNPKTNGTVPHVYSSSETPKARVTNEKYSIESWVADPSRNDNCRYFGRMVGGAATPPVVSFSNNS
Predicted secondary structure










































SS confidence





































































Known secondary structure (DSSP)
SSSS

SSTTS


SS

TTTS


SS

BTTT
TTT
TT

SS







SS
 .........220.........230.........240.........250.........260...
Sequence TIPLLDENGIGILCLQGRLYITCADLLGVNKNRVHTGLSRFFRLHFRQRRVRN
Predicted secondary structure






















SS confidence




















































Known secondary structure (DSSP)



TTS


TTS
SSS

S


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


Phyre is now FREE for commercial users!

All images and data generated by Phyre2 are free to use in any publication with acknowledgement

Accessibility Statement
Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction
Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960
 
© Structural Bioinformatics Group, Imperial College, London
Michael Sternberg  
Disclaimer
Terms and Conditions
Structural Biology Group logo Imperial logo
BBSRC logo
Phyre2 is part of Genome3D