PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3s6cA_

Fold library id	PDB Header	Molecule	Title
c3s6cA_	PDB header: immune system, lipid binding protein	Chain: A: PDB Molecule: beta-2-microglobulin, t-cell surface glycoprotein cd1e,	PDBTitle: structure of human cd1e

Links to external resources
Added to library: Sat Jul 23 09:51:27 2011

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence I Q R T P K I Q V Y S R H P A E N G K S N F L N C Y V S G F H P S D I E V D L L K N G E R I E K V E H S D L S F S K D W S F Y L L Y Y T E F

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
B
S S
S S S
B S S
T T
S S
T T S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence T P T E K D E Y A C R V N H V T L S Q P K I V K W D R D M D Q L S F R M L Q T S S F A N H S W A H S E G S G W L G D L Q T H G W D T V L G T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
T T
S S
T T
S
S S
T T T T T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence I R F L K P W S H G N F S K Q E L K N L Q S L F Q L Y F H S F I R I V Q A S A G Q F Q L E Y P F E I Q I L A G C R M N A P Q I F L N M A Y Q

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S G G G G T T
T T T T T
S S
S S S
B S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence G S D F L S F S W E P S P G A G I R A Q N I C K V L N R Y L D I K E I L Q S L L G H T C P R F L A G L M E A G E S E L K R K V K P E A W L S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S
T T T
T T T T S
B
B

. . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . . . 340 . . . . . . . . . 350

Sequence C G P S P G P G R L Q L V C H V S G F Y P K P V W V M W M R G E Q E Q R G T Q R G D V L P N A D E T W Y L R A T L D V A A G E A A G L S C R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S S
B
S
B S S
S T T
T T
T T T
T T

. . . . . . . . . 360 . . . . . . . . . 370 . .

Sequence V K H S S L G G H D L I I H W G G E N L Y F

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T S S
T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	I	Q	R	T	P	K	I	Q	V	Y	S	R	H	P	A	E	N	G	K	S	N	F	L	N	C	Y	V	S	G	F	H	P	S	D	I	E	V	D	L	L	K	N	G	E	R	I	E	K	V	E	H	S	D	L	S	F	S	K	D	W	S	F	Y	L	L	Y	Y	T	E	F
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			B									S	S				S	S	S												B	S	S									T	T				S	S										T	T	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	T	P	T	E	K	D	E	Y	A	C	R	V	N	H	V	T	L	S	Q	P	K	I	V	K	W	D	R	D	M	D	Q	L	S	F	R	M	L	Q	T	S	S	F	A	N	H	S	W	A	H	S	E	G	S	G	W	L	G	D	L	Q	T	H	G	W	D	T	V	L	G	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				S	S										T	T		S	S								T	T															S		S	S											T	T								T	T	T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	I	R	F	L	K	P	W	S	H	G	N	F	S	K	Q	E	L	K	N	L	Q	S	L	F	Q	L	Y	F	H	S	F	I	R	I	V	Q	A	S	A	G	Q	F	Q	L	E	Y	P	F	E	I	Q	I	L	A	G	C	R	M	N	A	P	Q	I	F	L	N	M	A	Y	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					S	G	G	G	G	T	T																												T	T	T	T	T			S	S												S	S	S								B	S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	G	S	D	F	L	S	F	S	W	E	P	S	P	G	A	G	I	R	A	Q	N	I	C	K	V	L	N	R	Y	L	D	I	K	E	I	L	Q	S	L	L	G	H	T	C	P	R	F	L	A	G	L	M	E	A	G	E	S	E	L	K	R	K	V	K	P	E	A	W	L	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S	S											T	T	T																																									T	T	T	T	S			B						B
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Sequence	C	G	P	S	P	G	P	G	R	L	Q	L	V	C	H	V	S	G	F	Y	P	K	P	V	W	V	M	W	M	R	G	E	Q	E	Q	R	G	T	Q	R	G	D	V	L	P	N	A	D	E	T	W	Y	L	R	A	T	L	D	V	A	A	G	E	A	A	G	L	S	C	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						S	S	S						B				S		B	S	S								S	T	T				T	T										T	T	T																T	T
	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.
Sequence	V	K	H	S	S	L	G	G	H	D	L	I	I	H	W	G	G	E	N	L	Y	F
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				T	T	T	S	S									T	T