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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c3s4zA_

Fold library idPDB HeaderMoleculeTitle
c3s4zA_PDB header: dna binding proteinChain: A: PDB Molecule: dna repair 1;PDBTitle: structure of a y dna-fanci complex


Added to library: Wed Jan 9 19:24:58 2013
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence MDLKILSLATDKTTDKLQEFLQTLKDDDLASLLQNQAVKGRAVGTLLRAVLKGSPCSEEDGALRRYKIYS
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Known secondary structure (DSSP)

TT
S
S
TTTS
SSS
 .........80.........90.........100.........110.........120.........130.........140
Sequence CCIQLVESGDLQQDVASEIIGLLMLEVHHFPGPLLVDLASDFVGAVREDRLVNGKSLELLPIILTALATK
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Known secondary structure (DSSP) S


GGG

S


S
STTTTT
 .........150.........160.........170.........180.........190.........200.........210
Sequence KEVLACGKGDLNGEEYKRQLIDTLCSVRWPQRYMIQLTSVFKDVCLTPEEMNLVVAKVLTMFSKLNLQEI
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Known secondary structure (DSSP)
S

SSSS



S


TTTGGGS


TTS
GGG
 .........220.........230.........240.........250.........260.........270.........280
Sequence PPLVYQLLVLSSKGSRRSVLDGIIAFFRELDKQHREEQSSTAPADELYHVEGTVILHIVFAIKLDCELGR
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Known secondary structure (DSSP) TTS




S
 .........290.........300.........310.........320.........330.........340.........350
Sequence ELLKHLKAGQQGDPSKCLCPFSIALLLSLTRIQRFEEQVFDLLKTSVVKSFKDLQLLQGSKFLQTLVPQR
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Known secondary structure (DSSP)

SST

TTSGGGTT
S


 .........360.........370.........380.........390.........400.........410.........420
Sequence TCVSTMILEVVRNSVHSWDHVTQGLIEFGFILMDSYGPKKILDGSKMTNQHACKLGANILLETFKIHEMI
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Known secondary structure (DSSP)

TTTT

TTS

TTS


T
GGG
 .........430.........440.........450.........460.........470.........480.........490
Sequence RQEILEQVLNRVVTRTSSPINHFLDLFSDIIMYAPLILQNCSKVTETFDYLTFLPLQTVQGLLKAVQPLL
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Known secondary structure (DSSP)

SS


SS
GGGGGTTTS
 .........500.........510.........520.........530.........540.........550.........560
Sequence KISMSMRDSLILVLRKAMFASQLDARKSAVAGFLLLLKNFKVLGSLPVTQVRVDVHSRYSAVANETFCLE
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Known secondary structure (DSSP) TT
TT
SS

TT




SSS
SSS
SS

TT
 .........570.........580.........590.........600.........610.........620.........630
Sequence IIDSLKRSLGQQADIRLMLYDGFYDVLRRNSQLASSIMQTLFSQLKQFYEPEPDLLPPLKLGACVLTQGS
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Known secondary structure (DSSP) GGGGS

GGGB

SS

S

B

STTTT
 .........640.........650.........660.........670.........680.........690.........700
Sequence QIFLQEPLDHLLSCIQHCLAWYKSRVVPEEEEELYSELDDMLESITVRMIKNTNVGIKNNICACLIMGVC
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Known secondary structure (DSSP)
S
T







 .........710.........720.........730.........740.........750.........760.........770
Sequence EVLMEYNFSISNFSKSKFEEILSLFTCYKKFSDILKVSDSLLSLKFVSDLLTALFRDSIQSHEESLSVLR
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Known secondary structure (DSSP)
SS



TT

S
TT

SSS
 .........780.........790.........800.........810.........820.........830.........840
Sequence SSGEFMHYAVNVTLQKIQQLIRTGHVSGPDGQNPDKIFQNLCDITRVLLWRYTSSISLLCLEGLQKTFSV
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Known secondary structure (DSSP) TT
SS

SSTTSS



 .........850.........860.........870.........880.........890.........900.........910
Sequence VLQFYQPKVQQFLQALDVTVTQRASFQIRQFQRSLLNLLSSEEDDFNSKEALLLIAVLSTLSRLLEPTSP
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Known secondary structure (DSSP) TSGGGT

S

SS

STTSS
SSSS
 .........920.........930.........940.........950.........960.........970.........980
Sequence QFVQMLSWTSKICKEYSQEDASFCKSLMNLFFSLHVLYVTLLRDLSQDIHGQLGDIVVNLRTAAPTVCLL
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Known secondary structure (DSSP) S


S
TT







TTT
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence VLSQAEKVLEEVDWLIAKIKGSAPTLLIEKAIVMQLGTLVTFFHELVQTALPSGSCVDTLLKGLSKIYST
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Known secondary structure (DSSP) TT

S


TTT
 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence LTAFVKYYLQVCQSSGIPNTVEKLVKLSGSHLTPVCYSFISYVQNKSSPIPNLVFAIEQYEKFLIQLSKK
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Known secondary structure (DSSP) TS




TTT

 .........1130.
Sequence SKVNLMQHMKL
Predicted secondary structure


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Known secondary structure (DSSP) SS




Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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