PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c3rrlD_

Fold library id	PDB Header	Molecule	Title
c3rrlD_	PDB header: transferase	Chain: D: PDB Molecule: succinyl-coa:3-ketoacid-coenzyme a transferase subunit b;	PDBTitle: complex structure of 3-oxoadipate coa-transferase subunit a and b from2 helicobacter pylori 26695

Links to external resources
Added to library: Thu Jan 10 03:04:50 2013

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence R E A I I K R A A K E L K E G X Y V N L G I G L P T L V A N E V S G X N I V F Q S E N G L L G I G A Y P L E G S V D A D L I N A G K E T I T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
T T
S S G G G G
T T S
T T T
T T T
T T
B
T T S
B

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence V V P G A S F F N S A D S F A X I R G G H I D L A I L G G X E V S Q N G D L A N W X I P K K L I K G X G G A X D L V H G A K K V I V I X E H

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
S
S T T S
S
B T T T B
T T S S
S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . .

Sequence C N K Y G E S K V K K E C S L P L T G K G V V H Q L I T D L A V F E F S N N A X K L V E L Q E G V S L D Q V K E K T E A E F E V R L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) B
T T S
B S S S
S S
S B S S
S
S S T T
T T
S

Download: PDB structure FASTA sequence
Hidden Markov model

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	R	E	A	I	I	K	R	A	A	K	E	L	K	E	G	X	Y	V	N	L	G	I	G	L	P	T	L	V	A	N	E	V	S	G	X	N	I	V	F	Q	S	E	N	G	L	L	G	I	G	A	Y	P	L	E	G	S	V	D	A	D	L	I	N	A	G	K	E	T	I	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)										T	T			T	T							S	S					G	G	G	G		T	T	S							T	T	T										T	T	T			T	T		B		T	T	S		B
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	V	V	P	G	A	S	F	F	N	S	A	D	S	F	A	X	I	R	G	G	H	I	D	L	A	I	L	G	G	X	E	V	S	Q	N	G	D	L	A	N	W	X	I	P	K	K	L	I	K	G	X	G	G	A	X	D	L	V	H	G	A	K	K	V	I	V	I	X	E	H
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																			T	T			S							S				T	T	S					S		B	T	T	T	B					T	T								S	S								S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.
Sequence	C	N	K	Y	G	E	S	K	V	K	K	E	C	S	L	P	L	T	G	K	G	V	V	H	Q	L	I	T	D	L	A	V	F	E	F	S	N	N	A	X	K	L	V	E	L	Q	E	G	V	S	L	D	Q	V	K	E	K	T	E	A	E	F	E	V	R	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	B		T	T	S		B	S			S	S		S	S			S	B	S	S			S					S	S							T	T									T	T												S