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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c3rooA_

Fold library idPDB HeaderMoleculeTitle
c3rooA_PDB header: immune systemChain: A: PDB Molecule: murine class i major histocompatibility complex h-2kb;PDBTitle: murine class i major histocompatibility complex h-2kb in complex with2 immunodominant lcmv-derived gp34-41 peptide


Added to library: Sat Apr 7 17:55:12 2012
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence GPHSLRYFVTAVSRPGLGEPRYMEVGYVDDTEFVRFDSDAENPRYEPRARWMEQEGPEYWERETQKAKGN
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Known secondary structure (DSSP)



TTSSS
TTTTSSS


SSGGGGGS
 .........80.........90.........100.........110.........120.........130.........140
Sequence EQSFRVDLRTLLGYYNQSKGGSHTIQVISGCEVGSDGRLLRGYQQYAYDGCDYIALNEDLKTWTAADMAA
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Known secondary structure (DSSP) TT

TTS


TTSSTT
TTSS
SS
 .........150.........160.........170.........180.........190.........200.........210
Sequence LITKHKWEQAGEAERLRAYLEGTCVEWLRRYLKNGNATLLRTDSPKAHVTHHSRPEDKVTLRCWALGFYP
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Known secondary structure (DSSP) TTTS

B


SSSBS
 .........220.........230.........240.........250.........260.........270.....
Sequence ADITLTWQLNGEELIQDMELVETRPAGDGTFQKWASVVVPLGKEQYYTCHVYHQGLPEPLTLRWE
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Known secondary structure (DSSP) S

SSS
B

TT



SSS
TT
GGG

TT
SS




Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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