PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3rd3B_

Fold library id	PDB Header	Molecule	Title
c3rd3B_	PDB header: transcription	Chain: B: PDB Molecule: probable transcriptional regulator;	PDBTitle: structure of pseudomonas aeruginosa transcriptional regulator pa2196

Links to external resources
Added to library: Sat Apr 7 19:56:11 2012

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence D T R Q H L L D T G Y R I M A V K G F S G V G L N E I L Q S A G V P K G S F Y H Y F K S K E Q F G Q A L L E D Y F R V Y L A D M D Q R F S A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
S S S S
T T T
S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence P G L N A R E R L M S Y W Q K W L D N A C P P C D E Q R C L V V K L S A E V A D L S E S M R I T L R D G S D G I I E R L V G C L G Q G R D D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
T T S S
T G G G S
T T T T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . .

Sequence G S L A P C D A R H M A S A L Y Q L W L G A S L L S K L H R S P G P L E T A M Q T T R S L L E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
S
S
T
S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	D	T	R	Q	H	L	L	D	T	G	Y	R	I	M	A	V	K	G	F	S	G	V	G	L	N	E	I	L	Q	S	A	G	V	P	K	G	S	F	Y	H	Y	F	K	S	K	E	Q	F	G	Q	A	L	L	E	D	Y	F	R	V	Y	L	A	D	M	D	Q	R	F	S	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		T	T																S	S	S	S								T	T	T											S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	P	G	L	N	A	R	E	R	L	M	S	Y	W	Q	K	W	L	D	N	A	C	P	P	C	D	E	Q	R	C	L	V	V	K	L	S	A	E	V	A	D	L	S	E	S	M	R	I	T	L	R	D	G	S	D	G	I	I	E	R	L	V	G	C	L	G	Q	G	R	D	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T																				T	T	S	S												T	G	G	G	S																									T	T	T	T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.
Sequence	G	S	L	A	P	C	D	A	R	H	M	A	S	A	L	Y	Q	L	W	L	G	A	S	L	L	S	K	L	H	R	S	P	G	P	L	E	T	A	M	Q	T	T	R	S	L	L	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T		S		S																									T		S