PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3qjjB_

Fold library id	PDB Header	Molecule	Title
c3qjjB_	PDB header: immune system/rna	Chain: B: PDB Molecule: putative uncharacterized protein ph0350;	PDBTitle: one ramp protein binding different rna substrates

Links to external resources
Added to library: Sat Feb 11 12:22:44 2012

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence H M R I E V K L L P L K D N P I L P F N Y N Y E V Y S Q I L E K V N S I E P T I A K L L S S P H G F W T F S R I I V R K R K I L P D K G I E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S S S
S
T
T T
S
S S T T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence I L S D D V S L Y I S S S N E D I I R A I A E A V E K S P E F K I G E L S F L V G D I K A I K V K E L G K E N V F S T L S P I V V R T V K F

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
S
S
T T
S S S
B

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence E G N K L R H W D L Y P H D E L F M D R L R K V M I L R Y S E V M G E T P K D R D F T I E V L K F K P T R L M V G S S Y I R G S L M V F R Y

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
T T S S S
S
T T

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240

Sequence A G S E E I A R F G Y E N G F G E K T G L G F G M V K L I E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S S
G G G T
S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	H	M	R	I	E	V	K	L	L	P	L	K	D	N	P	I	L	P	F	N	Y	N	Y	E	V	Y	S	Q	I	L	E	K	V	N	S	I	E	P	T	I	A	K	L	L	S	S	P	H	G	F	W	T	F	S	R	I	I	V	R	K	R	K	I	L	P	D	K	G	I	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)											S	S	S	S					S																										T		T	T		S									S	S					T	T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	I	L	S	D	D	V	S	L	Y	I	S	S	S	N	E	D	I	I	R	A	I	A	E	A	V	E	K	S	P	E	F	K	I	G	E	L	S	F	L	V	G	D	I	K	A	I	K	V	K	E	L	G	K	E	N	V	F	S	T	L	S	P	I	V	V	R	T	V	K	F
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S	S									S															S						T	T																		S							S	S		B
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	E	G	N	K	L	R	H	W	D	L	Y	P	H	D	E	L	F	M	D	R	L	R	K	V	M	I	L	R	Y	S	E	V	M	G	E	T	P	K	D	R	D	F	T	I	E	V	L	K	F	K	P	T	R	L	M	V	G	S	S	Y	I	R	G	S	L	M	V	F	R	Y
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		T	T									T	T	S																				S	S			S																			T	T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence	A	G	S	E	E	I	A	R	F	G	Y	E	N	G	F	G	E	K	T	G	L	G	F	G	M	V	K	L	I	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)															S	S	S		G	G	G	T		S