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  Protein Homology/analogY Recognition Engine V 2.2
 

Fold library entry viewer: c3qcwB_

Fold library idPDB HeaderMoleculeTitle
c3qcwB_PDB header: cell adhesionChain: B: PDB Molecule: neurexin-1-alpha;PDBTitle: structure of neurexin 1 alpha (domains lns1-lns6), no splice inserts


Added to library: Sat Jun 18 22:46:26 2011
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence EYIATFKGSEYFCYDLSQNPIQSSSDEITLSFKTLQRNGLMLHTGKSADYVNLALKNGAVSLVINLGSGA
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Known secondary structure (DSSP)


SS

TTS
S
S
S

SSSTTSS

 .........80.........90.........100.........110.........120.........130.........140
Sequence FEALVEPVNGKFNDNAWHDVKVTRNLRQVTISVDGILTTTGYTQEDYTMLGSDDFFYVGGSPSTADLPGS
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Known secondary structure (DSSP)


SS
SSSSS
TTSSS


SSS



SS

SSTTTSTT
 .........150.........160.........170.........180.........190.........200.........210
Sequence PVSNNFMGCLKEVVYKNNDVRLELSRLAKQGDPKMKIHGVVAFKCENVATLDPITFETPESFISLPKWNA
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Known secondary structure (DSSP)






SS

S

TTSS




S







STT






 .........220.........230.........240.........250.........260.........270.........280
Sequence KKTGSISFDFRTTEPNGLILFSHGKPRHQKDAKHPQMIKVDFFAIEMLDGHLYLLLDMGSGTIKIKALQK
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Known secondary structure (DSSP) SS


S

SS

SS
TTS

TTSSS
S
SS
 .........290.........300.........310.........320.........330.........340.........350
Sequence KVNDGEWYHVDFQRDGRSGTISVNTLRTPYTAPGESEILDLDDELYLGGLPENKAGLVFPTEVWTALLNY
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Known secondary structure (DSSP)


SS

TTTT
SSS






S
SS

SS
TT



TT
TT
 .........360.........370.........380.........390.........400.........410.........420
Sequence GYVGCIRDLFIDGQSKDIRQMAEVQSTAGVKPSCSRETAKPCLSNPCKNNGMCRDGWNRYVCDCSGTGYL
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Known secondary structure (DSSP) B

TT
TTTTT
TTSS



SS
GGGS



TT

SSS
TTTT
 .........430.........440.........450.........460.........470.........480.........490
Sequence GRSCEREATVLSYDGSMFMKIQLPVVMHTEAEDVSLRFRSQRAYGILMATTSRDSADTLRLELDAGRVKL
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Known secondary structure (DSSP) STTS


SS

S
SSS
BTTBS
TT
 .........500.........510.........520.........530.........540.........550.........560
Sequence TVNLGKGPETLFAGYNLNDNEWHTVRVVRRGKSLKLTVDDQQAMTGQMAGDHTRLEFHNIETGIITERRY
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Known secondary structure (DSSP) SSS

S


SSS
TTTTS


SSS


SS



TT
 .........570.........580.........590.........600.........610.........620.........630
Sequence LSSVPSNFIGHLQSLTFNGMAYIDLCKNGDIDYCELNARFGFRNIIADPVTFKTKSSYVALATLQAYTSM
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Known secondary structure (DSSP)
S





TTTTS
S


S





S

STT
S



SS
 .........640.........650.........660.........670.........680.........690.........700
Sequence HLFFQFKTTSLDGLILYNSGDGNDFIVVELVKGYLHYVFDLGNGANLIKGSSNKPLNDNQWHNVMISRDT
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Known secondary structure (DSSP)
S
S
STT
TTSSS




SS
S
SSS

T
 .........710.........720.........730.........740.........750.........760.........770
Sequence SNLHTVKIDTKITTQITAGARNLDLKSDLYIGGVAKETYKSLPKLVHAKEGFQGCLASVDLNGRLPDLIS
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Known secondary structure (DSSP) T
TT







S


GGGGGG

TT


SSB

TTB


TTT
 .........780.........790.........800.........810.........820.........830.........840
Sequence DALFCNGQIERGCEGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGTTYIFSKGGGQITY
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Known secondary structure (DSSP) T
SS
SSS






TTSSSSS
TT
TTSS
BSTTS
B


 .........850.........860.........870.........880.........890.........900.........910
Sequence KWPPNDRPSTRADRLAIGFSTVQKEAVLVRVDSSSGLGDYLELHIHQGKIGVKFNVGTDDIAIEESNAII
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Known secondary structure (DSSP)

TT



BSB

SS
TT


TTSSS



S


 .........920.........930.........940.........950.........960.........970.........980
Sequence NDGKYHVVRFTRSGGNATLQVDSWPVIERYPAGRQLTIFNSQATIIIGGKEQGQPFQGQLSGLYYNGLKV
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Known secondary structure (DSSP) BSSS
TTTTS




S




B
SSSTTTT



TTB
 .........990.........1000...
Sequence LNMAAENDANIAIVGNVRLVGEV
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Known secondary structure (DSSP) TT
TT




Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction
Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960
 
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