PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3pvzD_

Fold library id	PDB Header	Molecule	Title
c3pvzD_	PDB header: lyase	Chain: D: PDB Molecule: udp-n-acetylglucosamine 4,6-dehydratase;	PDBTitle: udp-n-acetylglucosamine 4,6-dehydratase from vibrio fischeri

Links to external resources
Added to library: Thu Jan 10 03:08:30 2013

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence S I L S L I G R D T E L F H Q D I N A N E K E L Q S V V S Q S R F L V L G G A G S I G Q A V T K E I F K R N P Q K L H V V D I S E N N X V E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
S
S S T
T T T S T T
S
S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence L V R D I R S S F G Y I N G D F Q T F A L D I G S I E Y D A F I K A D G Q Y D Y V L N L S A L K H V R S E K D P F T L X R X I D V N V F N T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
S S
T T S
S
G G G G S S T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence D K T I Q Q S I D A G A K K Y F C V S T D K A A N P V N X X G A S K R I X E X F L X R K S E E I A I S T A R F A N V A F S D G S L L H G F N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S
S
S S
S T T T S
T T
T T S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence Q R I Q K N Q P I V A P N D I K R Y F V T P Q E S G E L C L X S C I F G E N R D I F F P K L S E A L H L I S F A D I A V K Y L K Q L G Y E P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S S
T T
S S
T T

. . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . . . 340 . . . . . . . . . 350

Sequence H L C E S E D E A R E L A K T L P A Q G K W P C L F T S S D T E F F T D K E T L D X A R F D N L G I I K N Y Q Q E L L E L F E Q K I G Q X K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S T G G G T
T T S
S S
S S

. . . . . . . . . 360 . . . . . . . . . 370 .

Sequence T D R Q W T K E E I V Q L F F I X I P D F

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
S T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	S	I	L	S	L	I	G	R	D	T	E	L	F	H	Q	D	I	N	A	N	E	K	E	L	Q	S	V	V	S	Q	S	R	F	L	V	L	G	G	A	G	S	I	G	Q	A	V	T	K	E	I	F	K	R	N	P	Q	K	L	H	V	V	D	I	S	E	N	N	X	V	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						T	T			S		S	S																	T							T	T	T	S												T	T			S							S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	L	V	R	D	I	R	S	S	F	G	Y	I	N	G	D	F	Q	T	F	A	L	D	I	G	S	I	E	Y	D	A	F	I	K	A	D	G	Q	Y	D	Y	V	L	N	L	S	A	L	K	H	V	R	S	E	K	D	P	F	T	L	X	R	X	I	D	V	N	V	F	N	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									T				S	S									T	T	S														S											G	G	G	G	S	S												T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	D	K	T	I	Q	Q	S	I	D	A	G	A	K	K	Y	F	C	V	S	T	D	K	A	A	N	P	V	N	X	X	G	A	S	K	R	I	X	E	X	F	L	X	R	K	S	E	E	I	A	I	S	T	A	R	F	A	N	V	A	F	S	D	G	S	L	L	H	G	F	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)										T	T		S								S		S	S				S																	T	T	T	S											T	T		T	T	S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	Q	R	I	Q	K	N	Q	P	I	V	A	P	N	D	I	K	R	Y	F	V	T	P	Q	E	S	G	E	L	C	L	X	S	C	I	F	G	E	N	R	D	I	F	F	P	K	L	S	E	A	L	H	L	I	S	F	A	D	I	A	V	K	Y	L	K	Q	L	G	Y	E	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					T	T							S	S																								T	T									S	S																	T	T
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Sequence	H	L	C	E	S	E	D	E	A	R	E	L	A	K	T	L	P	A	Q	G	K	W	P	C	L	F	T	S	S	D	T	E	F	F	T	D	K	E	T	L	D	X	A	R	F	D	N	L	G	I	I	K	N	Y	Q	Q	E	L	L	E	L	F	E	Q	K	I	G	Q	X	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				S	S											T	G	G	G	T																T	T	S					S	S		S	S
	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.
Sequence	T	D	R	Q	W	T	K	E	E	I	V	Q	L	F	F	I	X	I	P	D	F
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			T															S	T	T