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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c3pawD_

Fold library idPDB HeaderMoleculeTitle
c3pawD_PDB header: oxidoreductaseChain: D: PDB Molecule: ribonucleoside-diphosphate reductase large chain 1;PDBTitle: low resolution x-ray crystal structure of yeast rnr1p with datp bound2 in the a-site


Added to library: Thu Jan 10 02:08:39 2013
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence MYVYKRDGRKEPVQFDKITARISRLCYGLDPKHIDAVKVTQRIISGVYEGVTTIELDNLAAETCAYMTTV
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Known secondary structure (DSSP)




SSS





STTTTTTTSTT
SSS
TTS

SSSSGGGTTSS

S


TTTTTTT
SS
 .........80.........90.........100.........110.........120.........130.........140
Sequence HPDYATLAARIAISNLHKQTTKQFSKVVEDLYRYVNAATGKPAPMISDDVYNIVMENKDKLNSAIVYDRD
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Known secondary structure (DSSP)
TTSSTTTTTSS

STTTTTTTTTT
B
SSS

B

SS
TTSS

SSSSSSS
TTGG
 .........150.........160.........170.........180.........190.........200.........210
Sequence FQYSYFGFKTLERSYLLRINGQVAERPQHLIMRVALGIHGRDIEAALETYNLMSLKYFTHASPTLFNAGT
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Known secondary structure (DSSP) GSS
TTS
BSSSSB


TTSSTTTSTT

TTTTTSSSS

TTTTTSTTS
 .........220.........230.........240.........250.........260.........270.........280
Sequence PKPQMSSCFLVAMKEDSIEGIYDTLKECALISKTAGGIGLHIHNIRSTGSYIAGTNGTSNGLIPMIRVFN
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Known secondary structure (DSSP) SS











SSSTTTTTTTTGGGTTTTTS


B

B

S


SS


SSSSS



SSTTTTGGG
 .........290.........300.........310.........320.........330.........340.........350
Sequence NTARYVDQGGNKRPGAFALYLEPWHADIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEENGTWTL
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Known secondary structure (DSSP) SSSSS






S


B

B

TTBSSSSSSSSTTSS
STTTS


SS

B



TTGGGTSSSS

 .........360.........370.........380.........390.........400.........410.........420
Sequence FSPTSAPGLSDCYGDEFEALYTRYEKEGRGKTIKAQKLWYSILEAQTETGTPFVVYKDACNRKSNQKNLG
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Known secondary structure (DSSP) B
TTSS
S
TT

TTTTTSSTTTSSTTS
S
TTTSTTTTTTTTTTT

S

B
T
S
TTSS
 .........430.........440.........450.........460.........470.........480.........490
Sequence VIKSSNLCCEIVEYSAPDETAVCNLASVALPAFIETSEDGKTSTYNFKKLHEIAKVVTRNLNRVIDRNYY
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Known secondary structure (DSSP)





SSS






SS







STTS

TT
SS

TTTTTTTSTTTTTTTTS


 .........500.........510.........520.........530.........540.........550.........560
Sequence PVEEARKSNMRHRPIALGVQGLADTFMLLRLPFDSEEARLLNIQIFETIYHASMEASCELAQKDGPYETF
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Known secondary structure (DSSP) SSTGGGT




S
TTTT

SSSTTTTTTTTTTTSSSSSSSTTTT


TT
 .........570.........580.........590.........600.........610.........620.........630
Sequence QGSPASQGILQFDMWDQKPYGMWDWDTLRKDIMKHGVRNSLTMAPMPTASTSQILGYNECFEPVTSNMYS
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Known secondary structure (DSSP) SSSTTTTS

SGGGTT



SSS
GGGTGGGTTTT

S
S

B




SSTS
STT


SSSSB
 .........640.........650.........660.........670.........680.........690.........700
Sequence FQVVNPYLLRDLVDLGIWDEGMKQYLITQNGSIQGLPNVPQELKDLYKTVWEISQKTIINMAADRSVYID
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Known secondary structure (DSSP)

B

SSSSSSSTTTT

SGGGSSTTTSSTT

SS
SS

SSSSSSS

SSSS
TTSSSTTTSSSSSS
S
 .........710.........720.........730.........
Sequence QSHSLNLFLRAPTMGKLTSMHFYGWKKGLKTGMYYLRTQ
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Known secondary structure (DSSP) S





S


TTTTSS

SB


S


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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