PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3or8A_

Fold library id	PDB Header	Molecule	Title
c3or8A_	PDB header: transcription	Chain: A: PDB Molecule: transcription elongation factor spt6;	PDBTitle: a tandem sh2 domain in transcription elongation factor spt6

Links to external resources
Added to library: Tue Oct 19 11:35:37 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence R V I N H P Y Y F P F N G K Q A E D Y L R S K E R G D F V I R Q S S R G D D H L A I T W K L D K D L F Q H V D I Q E L E K E N P L A L G K V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
T T S
T T
S S
T T T T S
S S T T S
S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence L V V E G Q R Y H D L D Q I I V E Y L Q N K I R L L N E L T S N E K F K A G T K K E V V K F I E D Y S K V N P K K S V Y Y F S L N Y E N P G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T S S T T S T T
S
T T
T T S T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . .

Sequence W F Y L I F K L N A E S K L Y I W N V K L T H T G F F L V N Y N Y P T V I Q L C N G F K T L L K S S N T R N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S T T S
S S S T T S S T S
G G G

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	R	V	I	N	H	P	Y	Y	F	P	F	N	G	K	Q	A	E	D	Y	L	R	S	K	E	R	G	D	F	V	I	R	Q	S	S	R	G	D	D	H	L	A	I	T	W	K	L	D	K	D	L	F	Q	H	V	D	I	Q	E	L	E	K	E	N	P	L	A	L	G	K	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						T	T														T	T	S		T	T								S	S		T	T										T	T											S		S	S	T	T	S			S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	L	V	V	E	G	Q	R	Y	H	D	L	D	Q	I	I	V	E	Y	L	Q	N	K	I	R	L	L	N	E	L	T	S	N	E	K	F	K	A	G	T	K	K	E	V	V	K	F	I	E	D	Y	S	K	V	N	P	K	K	S	V	Y	Y	F	S	L	N	Y	E	N	P	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				T	T				S	S								T													T	S	T	T				S																	T	T										T	T	S	T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.
Sequence	W	F	Y	L	I	F	K	L	N	A	E	S	K	L	Y	I	W	N	V	K	L	T	H	T	G	F	F	L	V	N	Y	N	Y	P	T	V	I	Q	L	C	N	G	F	K	T	L	L	K	S	S	N	T	R	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								S	S	T	T	S											S	S	S				T	T				S	S												T	S		G	G	G