PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3o59X_

Fold library id	PDB Header	Molecule	Title
c3o59X_	PDB header: transferase	Chain: X: PDB Molecule: dna polymerase ii large subunit;	PDBTitle: dna polymerase d large subunit dp2(1-300) from pyrococcus horikoshii

Links to external resources
Added to library: Sat Jan 8 10:56:00 2011

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence S D X A G R V E S L V G P P G V A E R I R E L V K E Y G K E I A A L K I V D E I I D G K F G D L G S K E K Y A E Q A V R T A L A I L T E G V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
T T T
S S T T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence V S A P I E G I A S V K I K R N T W S D N S E Y L A L Y Y A G P I R S S G G T A Q A L S V L V G D Y V R R K L G L D R F K P S E K H I E R X

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S
T T T T
G G G G G S
T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence V E E V D L Y H R T V S R L Q Y H P S P E E V R L A X R N I P I E I T G E A T D E V E V S H R D I P G V E T N Q L R G G A I L V L A E G V L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
S S
S S
B
S S
T T
S S B
T T T T

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . .

Sequence Q K A K K L V K Y I D K X G I E G W E W L K E F V E A K E K G E E I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T
S
T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	S	D	X	A	G	R	V	E	S	L	V	G	P	P	G	V	A	E	R	I	R	E	L	V	K	E	Y	G	K	E	I	A	A	L	K	I	V	D	E	I	I	D	G	K	F	G	D	L	G	S	K	E	K	Y	A	E	Q	A	V	R	T	A	L	A	I	L	T	E	G	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)														T	T																												T	T	T				S	S																	T	T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	V	S	A	P	I	E	G	I	A	S	V	K	I	K	R	N	T	W	S	D	N	S	E	Y	L	A	L	Y	Y	A	G	P	I	R	S	S	G	G	T	A	Q	A	L	S	V	L	V	G	D	Y	V	R	R	K	L	G	L	D	R	F	K	P	S	E	K	H	I	E	R	X
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S	S															T	T	T	T											G	G	G	G	G	S																			T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	V	E	E	V	D	L	Y	H	R	T	V	S	R	L	Q	Y	H	P	S	P	E	E	V	R	L	A	X	R	N	I	P	I	E	I	T	G	E	A	T	D	E	V	E	V	S	H	R	D	I	P	G	V	E	T	N	Q	L	R	G	G	A	I	L	V	L	A	E	G	V	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)											T				S	S															S	S								B					S	S				T	T				S	S	B										T	T	T	T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
Sequence	Q	K	A	K	K	L	V	K	Y	I	D	K	X	G	I	E	G	W	E	W	L	K	E	F	V	E	A	K	E	K	G	E	E	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T												T			S														T