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Protein Homology/analogY Recognition Engine V 2.2 |
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Fold library id | PDB Header | Molecule | Title |
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c3nffD_ | PDB header: transcription | Chain: D: PDB Molecule: rna polymerase i subunit a34.5; | PDBTitle: crystal structure of extended dimerization module of rna polymerase i2 subcomplex a49/a34.5 |
Added to library: Sat Sep 18 08:49:47 2010 | |
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Links to external resources | |
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  | 1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 |
Sequence | Y | Q | P | P | S | D | Y | K | Q | C | K | H | L | K | S | F | P | V | S | E | L | K | G | D | N | K | E | L | W | L | M | K | V | P | A | N | I | D | I | S | Q | L | K | S | L | P | L | D | T | D | A | T | V | S | T | V | E | L | G | S | K | N | F | N | V | L | Q | N | T | S |
Predicted secondary structure | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ||||||||||||||||||||||||||||||||||||||
SS confidence | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Known secondary structure (DSSP) | S | S | S | S | ![]() | ![]() | ![]() | ![]() | S | S | S | ![]() | ![]() | ![]() | T | T | T | T | T | S | S | S | S | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | T | T | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | G | G | G |   | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 |
Sequence | T | Q | E | G | S | D | N | T | N | L | S | L | L | I | P | S | K | K | E | T | L | K | V | A | T | S | K | S | V | Y | F | D | R | V | F | T | I | S | E | T | ||||||||||||||||||||||||||||||
Predicted secondary structure | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ||||||||||||||||||||||||||||||||||||||||||||||||||
SS confidence | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Known secondary structure (DSSP) | S | S | S | S | S | G | G | G | ![]() | ![]() | S | S | ![]() | ![]() | S | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() |
Download: | PDB structure | FASTA sequence |
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