PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3mx9A_

Fold library id	PDB Header	Molecule	Title
c3mx9A_	PDB header: hydrolase/dna	Chain: A: PDB Molecule: protein scv3v2(g19s);	PDBTitle: molecular basis of engineered meganuclease targeting of the endogenous2 human rag1 locus

Links to external resources
Added to library: Tue Oct 19 11:31:43 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence N T K Y N K E F L L Y L A G F V D G D G S I I A Q I N P N Q S S K F K H R L R L T F Y V T Q K T Q R R W F L D K L V D E I G V G Y V R D S G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S S T T S G G G
S
T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence S V S Q Y V L S E I K P L H N F L T Q L Q P F L K L K Q K Q A N L V L K I I E Q L P S A K E S P D K F L E V C T W V D Q I A A L N D S K T R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
G G G
S S S T T T
T T
S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence K T T S E T V R A S N K E F L L Y L A G F V D S D G S I I A Q I K P R Q S N K F K H Q L S L T F A V T Q K T Q R R W F L D K L V D E I G V G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S T T S G G G S S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence Y V Y D S G S V S D Y R L S E I K P L H N F L T Q L Q P F L K L K Q K Q A N L V L K I I E Q L P S A K E S P D K F L E V C T W V D Q I A A L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
G G G
S S S T T T

. . . . . . . . . 290 . . . . . . . .

Sequence N D S K T R K T T S E T V R A V L D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S
G G G G

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	N	T	K	Y	N	K	E	F	L	L	Y	L	A	G	F	V	D	G	D	G	S	I	I	A	Q	I	N	P	N	Q	S	S	K	F	K	H	R	L	R	L	T	F	Y	V	T	Q	K	T	Q	R	R	W	F	L	D	K	L	V	D	E	I	G	V	G	Y	V	R	D	S	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																														S	S	S	T	T	S													G	G	G													S							T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	S	V	S	Q	Y	V	L	S	E	I	K	P	L	H	N	F	L	T	Q	L	Q	P	F	L	K	L	K	Q	K	Q	A	N	L	V	L	K	I	I	E	Q	L	P	S	A	K	E	S	P	D	K	F	L	E	V	C	T	W	V	D	Q	I	A	A	L	N	D	S	K	T	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T																				G	G	G		S	S	S													T					T	T																			T	T			S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	K	T	T	S	E	T	V	R	A	S	N	K	E	F	L	L	Y	L	A	G	F	V	D	S	D	G	S	I	I	A	Q	I	K	P	R	Q	S	N	K	F	K	H	Q	L	S	L	T	F	A	V	T	Q	K	T	Q	R	R	W	F	L	D	K	L	V	D	E	I	G	V	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																																				T	T	S	T	T	S													G	G	G												S	S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	Y	V	Y	D	S	G	S	V	S	D	Y	R	L	S	E	I	K	P	L	H	N	F	L	T	Q	L	Q	P	F	L	K	L	K	Q	K	Q	A	N	L	V	L	K	I	I	E	Q	L	P	S	A	K	E	S	P	D	K	F	L	E	V	C	T	W	V	D	Q	I	A	A	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						T	T																				G	G	G		S	S	S													T					T	T
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.
Sequence	N	D	S	K	T	R	K	T	T	S	E	T	V	R	A	V	L	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T			S									G	G	G	G