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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c3mlwL_

Fold library idPDB HeaderMoleculeTitle
c3mlwL_PDB header: immune systemChain: L: PDB Molecule: human monoclonal anti-hiv-1 gp120 v3 antibody 1006-15d fabPDBTitle: crystal structure of anti-hiv-1 v3 fab 1006-15d in complex with an mn2 v3 peptide


Added to library: Sun Aug 29 02:53:41 2010
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence QSVLTQPPSASGTPGQRVTISCSGNSSNIENNYVYWYQQLPGSTPKLLIFRDDQRPSGVPDRFSGSKSGT
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Known secondary structure (DSSP)


BB

S
TTS

TTTTTTS

TTS

BTTTB

TTS
TTTT
 .........80.........90.........100.........110.........120.........130.........140
Sequence SASLAISGLRSEDEADYYCASWDDSRGGPDYVFGTGTKVTVLGQPKANPTVTLFPPSSEELQANKATLVC
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Known secondary structure (DSSP) S

GGG

SSSS
B


SS

B




TT
 .........150.........160.........170.........180.........190.........200.........210
Sequence LISDFYPGAVTVAWKADGSPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEK
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Known secondary structure (DSSP) BSS

TT
TT



TTS

SS
TT
 .....
Sequence TVAPT
Predicted secondary structure
SS confidence




Known secondary structure (DSSP)



Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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