PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3lu0C_

Fold library id	PDB Header	Molecule	Title
c3lu0C_	PDB header: transferase	Chain: C: PDB Molecule: dna-directed rna polymerase subunit beta;	PDBTitle: molecular model of escherichia coli core rna polymerase

Links to external resources
Added to library: Wed Jan 9 16:42:01 2013

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence K K R I R K D F G K R P Q V L D V P Y L L S I Q L D S F Q K F I E Q D P E G Q Y G L E A A F R S V F P I Q S Y S G N S E L Q Y V S Y R L G E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
S S
G G G T T S
S S S
S
S T T T T T S S
T T T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence P V F D V Q E C Q I R G V T Y S A P L R V K L R L V I Y E R E A P E G T V K D I K E Q E V Y M G E I P L M T D N G T F V I N G T E R V I V S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
S S T T T S S
B
S S
B
B
S S S
S S S S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence Q L H R S P G V F F D S D K G K T H S S G K V L Y N A R I I P Y R G S W L D F E F D P K D N L F V R I D R R R K L P A T I I L R A L N Y T T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
S
S
S S S
S
S S S
T T T S S
S
T T T T T

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence E Q I L D L F F E K V I F E I R D N K L Q M E L V P E R L R G E T A S F D I E A N G K V Y V E K G R R I T A R H I R Q L E K D D V K L I E V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T S
T T
G G G G T T
S
T T
S S S
S T T

. . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . . . 340 . . . . . . . . . 350

Sequence P V E Y I A G K V V A K D Y I D E S T G E L I C A A N M E L S L D L L A K L S Q S G H K R I E T L F T N D L D H G P Y I S E T L R V D P T N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S T S
S
T T T
S S
B
T T T
S
S S S S
S G G G T T T T

. . . . . . . . . 360 . . . . . . . . . 370 . . . . . . . . . 380 . . . . . . . . . 390 . . . . . . . . . 400 . . . . . . . . . 410 . . . . . . . . . 420

Sequence D R L S A L V E I Y R M M R P G E P P T R E A A E S L F E N L F F S E D R Y D L S A V G R M K F N R S L L R E E I E G S G I L S K D D I I D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S S
S S
T T S
T T T
T T T T T T T
S
S S
T T

. . . . . . . . . 430 . . . . . . . . . 440 . . . . . . . . . 450 . . . . . . . . . 460 . . . . . . . . . 470 . . . . . . . . . 480 . . . . . . . . . 490

Sequence V M K K L I D I R N G K G E V D D I D H L G N R R I R S V G E M A E N Q F R V G L V R V E R A V K E R L S L G D L D T L M P Q D M I N A K P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T S S
S S S T T T S
T T T
S S
S S T T T
S S T

. . . . . . . . . 500 . . . . . . . . . 510 . . . . . . . . . 520 . . . . . . . . . 530 . . . . . . . . . 540 . . . . . . . . . 550 . . . . . . . . . 560

Sequence I S A A V K E F F G S S Q L S Q F M V Q N N P L S E I T H K R R I S A L G P G G L T R E R A G F E V R D V H P T H Y G R V C P I E T P E G P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T T T T T
S S
S S S B S
S T T S
S S
T T T S S
T T
S S S S
T T
S S S

. . . . . . . . . 570 . . . . . . . . . 580 . . . . . . . . . 590 . . . . . . . . . 600 . . . . . . . . . 610 . . . . . . . . . 620 . . . . . . . . . 630

Sequence N I G L I N S L S V Y A Q T N E Y G F L E T P Y R K V T D G V V T D E I H Y L S A I E E G N Y V I A Q A N S N L D E E G H F V E D L V T C R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S S
B
S S
B
S S S
B
T T
T T T G G G S
B
S S S
S S S S
S
S S

. . . . . . . . . 640 . . . . . . . . . 650 . . . . . . . . . 660 . . . . . . . . . 670 . . . . . . . . . 680 . . . . . . . . . 690 . . . . . . . . . 700

Sequence S K G E S S L F S R D Q V D Y M D V S T Q Q V V S V G A S L I P F L E H D D A N R A L M G A N M Q R Q A V P T L R A D K P L V G T G M E R A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
T T T
S
T T T T S
S
T T S T T B
T T T T B
S S
S S B
S

. . . . . . . . . 710 . . . . . . . . . 720 . . . . . . . . . 730 . . . . . . . . . 740 . . . . . . . . . 750 . . . . . . . . . 760 . . . . . . . . . 770

Sequence V A V D S G V T A V A K R G G V V Q Y V D A S R I V I K V N E D E M Y P G E A G I D I Y N L T K Y T R S N Q N T C I N Q M P C V S L G E P V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T S
B
S S
B
S S B
S S S S S S S
B
S
B
S S S
B
B
S S
B

. . . . . . . . . 780 . . . . . . . . . 790 . . . . . . . . . 800 . . . . . . . . . 810 . . . . . . . . . 820 . . . . . . . . . 830 . . . . . . . . . 840

Sequence E R G D V L A D G P S T D L G E L A L G Q N M R V A F M P W N G Y N F E D S I L V S E R V V Q E D R F T T I H I Q E L A C V S R D T K L G P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
B
B
S S
S S S S
S
S S T T S S S
T T T T S
T T

. . . . . . . . . 850 . . . . . . . . . 860 . . . . . . . . . 870 . . . . . . . . . 880 . . . . . . . . . 890 . . . . . . . . . 900 . . . . . . . . . 910

Sequence E E I T A D I P N V G E A A L S K L D E S G I V Y I G A E V T G G D I L V G K V T P K G E T Q L T P E E K L L R A I F G E K A S D V K D S S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
S S
S B
S S S
B
T T
T T
B
T T T
G G G T S
S S S S S B

. . . . . . . . . 920 . . . . . . . . . 930 . . . . . . . . . 940 . . . . . . . . . 950 . . . . . . . . . 960 . . . . . . . . . 970 . . . . . . . . . 980

Sequence L R V P N G V S G T V I D V Q V F T R D G V E K D K R A L E I E E M Q L K Q A K K D L S E E L Q I L E A G L F S R I R A V L V A G G V E A E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
G G G
T T T S

. . . . . . . . . 990 . . . . . . . . . 1000 . . . . . . . . . 1010 . . . . . . . . . 1020 . . . . . . . . . 1030 . . . . . . . . . 1040 . . . . . . . . . 1050

Sequence K L D K L P R D R W L E L G L T D E E K Q N Q L E Q L A E Q Y D E L K H E F E K K L E A K R R K I T Q G D D L A P G V L K I V K V Y L A V K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T S
G G G T T T
S S T T S
S S S S

. . . . . . . . . 1060 . . . . . . . . . 1070 . . . . . . . . . 1080 . . . . . . . . . 1090 . . . . . . . . . 1100 . . . . . . . . . 1110 . . . . . . . . . 1120

Sequence R R I Q P G D K M A G R H G N K G V I S K I N P I E D M P Y D E N G T P V D I V L N P L G V P S R M N I G Q I L E T H L G M A A K G I G D K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
S S S
T T T S
T T
S
G G G T T S S
B T G G G T S S T

. . . . . . . . . 1130 . . . . . . . . . 1140 . . . . . . . . . 1150 . . . . . . . . . 1160 . . . . . . . . . 1170 . . . . . . . . . 1180 . . . . . . . . . 1190

Sequence I N A M L K Q Q Q E V A K L R E F I Q R A Y D L G A D V R Q K V D L S T F S D E E V M R L A E N L R K G M P I A T P V F D G A K E A E I K E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T
T T T T T T T
S S S
T T T S
T T T T T S S
T T
B
S S S S

. . . . . . . . . 1200 . . . . . . . . . 1210 . . . . . . . . . 1220 . . . . . . . . . 1230 . . . . . . . . . 1240 . . . . . . . . . 1250 . . . . . . . . . 1260

Sequence L L K L G D L P T S G Q I R L Y D G R T G E Q F E R P V T V G Y M Y M L K L N H L V D D K M H A R S T G S Y S L V T Q Q P L G G K A Q F G G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T S S S S S
S S S
B
B
S S S
S B
S S
B
B
G G G S
S S
B
S S S
B
S S S

. . . . . . . . . 1270 . . . . . . . . . 1280 . . . . . . . . . 1290 . . . . . . . . . 1300 . . . . . . . . . 1310 . . . . . . . . . 1320 . . . . . . . . . 1330

Sequence Q R F G E M E V W A L E A Y G A A Y T L Q E M L T V K S D D V N G R T K M Y K N I V D G N H Q M E P G M P E S F N V L L K E I R S L G I N I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
S T T T S S S
T T T S
T S S

. . . . .

Sequence E L E D E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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Phyre2 is part of Genome3D

	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	K	K	R	I	R	K	D	F	G	K	R	P	Q	V	L	D	V	P	Y	L	L	S	I	Q	L	D	S	F	Q	K	F	I	E	Q	D	P	E	G	Q	Y	G	L	E	A	A	F	R	S	V	F	P	I	Q	S	Y	S	G	N	S	E	L	Q	Y	V	S	Y	R	L	G	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								S	S					S	S					G	G	G	T	T								S		S	S	S		S		S	T	T					T	T	T	S	S				T	T	T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	P	V	F	D	V	Q	E	C	Q	I	R	G	V	T	Y	S	A	P	L	R	V	K	L	R	L	V	I	Y	E	R	E	A	P	E	G	T	V	K	D	I	K	E	Q	E	V	Y	M	G	E	I	P	L	M	T	D	N	G	T	F	V	I	N	G	T	E	R	V	I	V	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		S			S	S	T	T	T	S	S									B											S	S										B				B									S	S	S				S	S	S	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	Q	L	H	R	S	P	G	V	F	F	D	S	D	K	G	K	T	H	S	S	G	K	V	L	Y	N	A	R	I	I	P	Y	R	G	S	W	L	D	F	E	F	D	P	K	D	N	L	F	V	R	I	D	R	R	R	K	L	P	A	T	I	I	L	R	A	L	N	Y	T	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						S	S					S			S		S	S	S				S									S	S	S									T	T	T							S	S		S				T	T					T	T	T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	E	Q	I	L	D	L	F	F	E	K	V	I	F	E	I	R	D	N	K	L	Q	M	E	L	V	P	E	R	L	R	G	E	T	A	S	F	D	I	E	A	N	G	K	V	Y	V	E	K	G	R	R	I	T	A	R	H	I	R	Q	L	E	K	D	D	V	K	L	I	E	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					T	T	T	S									T	T								G	G	G	G	T	T					S					T	T						S	S	S				S									T	T
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Sequence	P	V	E	Y	I	A	G	K	V	V	A	K	D	Y	I	D	E	S	T	G	E	L	I	C	A	A	N	M	E	L	S	L	D	L	L	A	K	L	S	Q	S	G	H	K	R	I	E	T	L	F	T	N	D	L	D	H	G	P	Y	I	S	E	T	L	R	V	D	P	T	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		S					T	S				S					T	T	T							S	S		B			T	T									T		S									S	S	S	S			S	G	G	G	T	T	T	T
	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence	D	R	L	S	A	L	V	E	I	Y	R	M	M	R	P	G	E	P	P	T	R	E	A	A	E	S	L	F	E	N	L	F	F	S	E	D	R	Y	D	L	S	A	V	G	R	M	K	F	N	R	S	L	L	R	E	E	I	E	G	S	G	I	L	S	K	D	D	I	I	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S	S												S		S	S				T	T											S		T	T	T				T	T	T							T	T	T	T		S						S	S			T	T
	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490
Sequence	V	M	K	K	L	I	D	I	R	N	G	K	G	E	V	D	D	I	D	H	L	G	N	R	R	I	R	S	V	G	E	M	A	E	N	Q	F	R	V	G	L	V	R	V	E	R	A	V	K	E	R	L	S	L	G	D	L	D	T	L	M	P	Q	D	M	I	N	A	K	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)											T	S	S					S	S	S	T	T	T	S												T													T	T							S	S			S	S	T	T	T			S	S	T
	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560
Sequence	I	S	A	A	V	K	E	F	F	G	S	S	Q	L	S	Q	F	M	V	Q	N	N	P	L	S	E	I	T	H	K	R	R	I	S	A	L	G	P	G	G	L	T	R	E	R	A	G	F	E	V	R	D	V	H	P	T	H	Y	G	R	V	C	P	I	E	T	P	E	G	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T					T	T	T	T	T	T		S	S							S	S									S	B			S			S	T	T	S			S	S			T	T	T	S	S			T	T		S	S	S	S		T	T				S	S	S
	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630
Sequence	N	I	G	L	I	N	S	L	S	V	Y	A	Q	T	N	E	Y	G	F	L	E	T	P	Y	R	K	V	T	D	G	V	V	T	D	E	I	H	Y	L	S	A	I	E	E	G	N	Y	V	I	A	Q	A	N	S	N	L	D	E	E	G	H	F	V	E	D	L	V	T	C	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		S	S	S			B			S	S			B		S	S	S		B									T	T											T	T	T	G	G	G	S		B			S	S	S			S	S	S	S			S		S	S
	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700
Sequence	S	K	G	E	S	S	L	F	S	R	D	Q	V	D	Y	M	D	V	S	T	Q	Q	V	V	S	V	G	A	S	L	I	P	F	L	E	H	D	D	A	N	R	A	L	M	G	A	N	M	Q	R	Q	A	V	P	T	L	R	A	D	K	P	L	V	G	T	G	M	E	R	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		S	S							T	T	T						S		T	T	T	T	S						S		T	T	S	T	T	B											T	T	T	T	B				S	S					S	S	B		S
	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770
Sequence	V	A	V	D	S	G	V	T	A	V	A	K	R	G	G	V	V	Q	Y	V	D	A	S	R	I	V	I	K	V	N	E	D	E	M	Y	P	G	E	A	G	I	D	I	Y	N	L	T	K	Y	T	R	S	N	Q	N	T	C	I	N	Q	M	P	C	V	S	L	G	E	P	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					T	T	T	S		B		S	S		B							S	S	B							S	S	S	S	S	S	S								B				S		B		S	S	S		B					B				S	S			B
	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840
Sequence	E	R	G	D	V	L	A	D	G	P	S	T	D	L	G	E	L	A	L	G	Q	N	M	R	V	A	F	M	P	W	N	G	Y	N	F	E	D	S	I	L	V	S	E	R	V	V	Q	E	D	R	F	T	T	I	H	I	Q	E	L	A	C	V	S	R	D	T	K	L	G	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		T	T		B		B			S	S		S	S	S	S				S											S	S	T	T	S	S	S						T					T	T	T	S																T	T
	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910
Sequence	E	E	I	T	A	D	I	P	N	V	G	E	A	A	L	S	K	L	D	E	S	G	I	V	Y	I	G	A	E	V	T	G	G	D	I	L	V	G	K	V	T	P	K	G	E	T	Q	L	T	P	E	E	K	L	L	R	A	I	F	G	E	K	A	S	D	V	K	D	S	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					S			S	S								S	B		S	S	S		B		T	T					T	T									B			T	T	T								G	G	G	T	S		S	S	S	S	S	B
	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980
Sequence	L	R	V	P	N	G	V	S	G	T	V	I	D	V	Q	V	F	T	R	D	G	V	E	K	D	K	R	A	L	E	I	E	E	M	Q	L	K	Q	A	K	K	D	L	S	E	E	L	Q	I	L	E	A	G	L	F	S	R	I	R	A	V	L	V	A	G	G	V	E	A	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					T	T														G	G	G				T																																						T	T	S
	.	.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050
Sequence	K	L	D	K	L	P	R	D	R	W	L	E	L	G	L	T	D	E	E	K	Q	N	Q	L	E	Q	L	A	E	Q	Y	D	E	L	K	H	E	F	E	K	K	L	E	A	K	R	R	K	I	T	Q	G	D	D	L	A	P	G	V	L	K	I	V	K	V	Y	L	A	V	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			T	T	S		G	G	G	T	T	T					S	S																															T	T	S						S	S	S	S
	.	.	.	.	.	.	.	.	.	1060	.	.	.	.	.	.	.	.	.	1070	.	.	.	.	.	.	.	.	.	1080	.	.	.	.	.	.	.	.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120
Sequence	R	R	I	Q	P	G	D	K	M	A	G	R	H	G	N	K	G	V	I	S	K	I	N	P	I	E	D	M	P	Y	D	E	N	G	T	P	V	D	I	V	L	N	P	L	G	V	P	S	R	M	N	I	G	Q	I	L	E	T	H	L	G	M	A	A	K	G	I	G	D	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					T	T						S	S	S											T	T	T	S				T	T					S					G	G	G	T	T	S	S		B	T											G	G	G	T	S	S	T
	.	.	.	.	.	.	.	.	.	1130	.	.	.	.	.	.	.	.	.	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.	.	.	.	.	.	.	1160	.	.	.	.	.	.	.	.	.	1170	.	.	.	.	.	.	.	.	.	1180	.	.	.	.	.	.	.	.	.	1190
Sequence	I	N	A	M	L	K	Q	Q	Q	E	V	A	K	L	R	E	F	I	Q	R	A	Y	D	L	G	A	D	V	R	Q	K	V	D	L	S	T	F	S	D	E	E	V	M	R	L	A	E	N	L	R	K	G	M	P	I	A	T	P	V	F	D	G	A	K	E	A	E	I	K	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				T	T	T						T	T	T								T	T	T	T				S	S	S			T	T	T	S								T	T	T	T	T	S	S		T	T		B			S	S	S	S
	.	.	.	.	.	.	.	.	.	1200	.	.	.	.	.	.	.	.	.	1210	.	.	.	.	.	.	.	.	.	1220	.	.	.	.	.	.	.	.	.	1230	.	.	.	.	.	.	.	.	.	1240	.	.	.	.	.	.	.	.	.	1250	.	.	.	.	.	.	.	.	.	1260
Sequence	L	L	K	L	G	D	L	P	T	S	G	Q	I	R	L	Y	D	G	R	T	G	E	Q	F	E	R	P	V	T	V	G	Y	M	Y	M	L	K	L	N	H	L	V	D	D	K	M	H	A	R	S	T	G	S	Y	S	L	V	T	Q	Q	P	L	G	G	K	A	Q	F	G	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		T	S	S	S	S	S		S	S	S		B			B		S	S	S		S	B		S	S		B										B				G	G	G	S					S	S			B		S	S	S			B				S	S	S
	.	.	.	.	.	.	.	.	.	1270	.	.	.	.	.	.	.	.	.	1280	.	.	.	.	.	.	.	.	.	1290	.	.	.	.	.	.	.	.	.	1300	.	.	.	.	.	.	.	.	.	1310	.	.	.	.	.	.	.	.	.	1320	.	.	.	.	.	.	.	.	.	1330
Sequence	Q	R	F	G	E	M	E	V	W	A	L	E	A	Y	G	A	A	Y	T	L	Q	E	M	L	T	V	K	S	D	D	V	N	G	R	T	K	M	Y	K	N	I	V	D	G	N	H	Q	M	E	P	G	M	P	E	S	F	N	V	L	L	K	E	I	R	S	L	G	I	N	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)														S	S		S							T	T	T	S	S	S													T	T	T	S																				T	S	S
	.	.	.	.	.
Sequence	E	L	E	D	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)