PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3ldvB_

Fold library id	PDB Header	Molecule	Title
c3ldvB_	PDB header: lyase	Chain: B: PDB Molecule: orotidine 5'-phosphate decarboxylase;	PDBTitle: 1.77 angstrom resolution crystal structure of orotidine 5'-2 phosphate decarboxylase from vibrio cholerae o1 biovar3 eltor str. n16961

Links to external resources
Added to library: Sat Aug 28 15:40:03 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence N D P K V I V A L D Y D N L A D A L A F V D K I D P S T C R L K V G K E M F T L F G P D F V R E L H K R G F S V F L D L K F H D I P N T C S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
T T S
T T S
T T
S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence K A V K A A A E L G V W M V N V H A S G G E R M M A A S R E I L E P Y G K E R P L L I G V T V L T S M E S A D L Q G I G I L S A P Q D H V L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
S G G G
G G G G G G S
S
T T
T T
S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence R L A T L T K N A G L D G V V C S A Q E A S L L K Q H L G R E F K L V T P G I R P A Q R R I M T P A Q A I A S G S D Y L V I G R P I T Q A A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
T T T
T T S
T T S
T
S
T
S

. . . . . . . . . 220 . . . .

Sequence H P E V V L E E I N S S L V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	N	D	P	K	V	I	V	A	L	D	Y	D	N	L	A	D	A	L	A	F	V	D	K	I	D	P	S	T	C	R	L	K	V	G	K	E	M	F	T	L	F	G	P	D	F	V	R	E	L	H	K	R	G	F	S	V	F	L	D	L	K	F	H	D	I	P	N	T	C	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)												S										T	T	S		T	T	S																								T	T											S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	K	A	V	K	A	A	A	E	L	G	V	W	M	V	N	V	H	A	S	G	G	E	R	M	M	A	A	S	R	E	I	L	E	P	Y	G	K	E	R	P	L	L	I	G	V	T	V	L	T	S	M	E	S	A	D	L	Q	G	I	G	I	L	S	A	P	Q	D	H	V	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)										T		S						G	G	G													G	G	G	G	G	G	S								S		T	T									T	T			S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	R	L	A	T	L	T	K	N	A	G	L	D	G	V	V	C	S	A	Q	E	A	S	L	L	K	Q	H	L	G	R	E	F	K	L	V	T	P	G	I	R	P	A	Q	R	R	I	M	T	P	A	Q	A	I	A	S	G	S	D	Y	L	V	I	G	R	P	I	T	Q	A	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									T	T								T	T	T										T	T	S												T	T	S										T		S										T		S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.
Sequence	H	P	E	V	V	L	E	E	I	N	S	S	L	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S												T