PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3kogA_

Fold library id	PDB Header	Molecule	Title
c3kogA_	PDB header: membrane protein	Chain: A: PDB Molecule: putative pore-forming toxin;	PDBTitle: crystal structure of putative pore-forming toxin2 (yp_001301288.1) from bacteroides vulgatus atcc 8482 at3 1.85 a resolution

Links to external resources
Added to library: Sun Aug 29 05:39:28 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence T P V N A K F I I T P V V I D A T T G T D V T Q S A E I S F S K G N G T Y E G T P E L A S E S I N I N A K Y K G X T G S A S V T I P A L K A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T T
G G G S S S S S S
S S S B
T T
B
T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence G Q F G A K E V T I I L S E N F F A Q E E S S N S Q I E T T K H S G F K N N T S D Y W Y Y I T V T Y T K K E G S E V I K N D Y E G D D S E I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
S S
S S B
S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence K N I I D A Y N K G V R E D K V T L N D V Q V L A H S R F S V F V D Y X K T T S V Y Q I I E K S P D G N P V A S F T V D S Y N T I V S P K N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
S
B S

. . . . . . . . . 220 . . . . . .

Sequence E Q I P G H G H A P S H G H G H

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
S S
S B
B T B

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	T	P	V	N	A	K	F	I	I	T	P	V	V	I	D	A	T	T	G	T	D	V	T	Q	S	A	E	I	S	F	S	K	G	N	G	T	Y	E	G	T	P	E	L	A	S	E	S	I	N	I	N	A	K	Y	K	G	X	T	G	S	A	S	V	T	I	P	A	L	K	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																T	T	T	T				G	G	G	S					S	S	S	S	S					S	S	S	B												T	T												B		T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	G	Q	F	G	A	K	E	V	T	I	I	L	S	E	N	F	F	A	Q	E	E	S	S	N	S	Q	I	E	T	T	K	H	S	G	F	K	N	N	T	S	D	Y	W	Y	Y	I	T	V	T	Y	T	K	K	E	G	S	E	V	I	K	N	D	Y	E	G	D	D	S	E	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T													S	S																									S	S	B																							S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	K	N	I	I	D	A	Y	N	K	G	V	R	E	D	K	V	T	L	N	D	V	Q	V	L	A	H	S	R	F	S	V	F	V	D	Y	X	K	T	T	S	V	Y	Q	I	I	E	K	S	P	D	G	N	P	V	A	S	F	T	V	D	S	Y	N	T	I	V	S	P	K	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							T		S																B	S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
Sequence	E	Q	I	P	G	H	G	H	A	P	S	H	G	H	G	H
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				T	T		S	S		S	B		B	T	B