PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3kmiB_

Fold library id	PDB Header	Molecule	Title
c3kmiB_	PDB header: membrane protein	Chain: B: PDB Molecule: putative membrane protein cog4129;	PDBTitle: crystal structure of putative membrane protein from2 clostridium difficile 630

Links to external resources
Added to library: Sat Aug 28 17:45:35 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence K I H E V Q K K L Q E E V S I V L I D I A D I I V N P K K E N G Y S R D L Y T L N S L I D S S I S E T Y D N I N N T L L S D T R F F L E H X

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S T T S
S T T T T S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence D I I K S Q R D I L E N L Y S Y V S Q L N S T P P Q A H I L S A F I H K I G Y T E F E E T G N L L L E E L K R L X I S X K N Q P L P V D R T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S S
T S
S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . .

Sequence E F E N R A I L F L C L T E L K Q F L V N R K H A Q X L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	K	I	H	E	V	Q	K	K	L	Q	E	E	V	S	I	V	L	I	D	I	A	D	I	I	V	N	P	K	K	E	N	G	Y	S	R	D	L	Y	T	L	N	S	L	I	D	S	S	I	S	E	T	Y	D	N	I	N	N	T	L	L	S	D	T	R	F	F	L	E	H	X
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																										S	T	T	S			S																						T	T	T	T	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	D	I	I	K	S	Q	R	D	I	L	E	N	L	Y	S	Y	V	S	Q	L	N	S	T	P	P	Q	A	H	I	L	S	A	F	I	H	K	I	G	Y	T	E	F	E	E	T	G	N	L	L	L	E	E	L	K	R	L	X	I	S	X	K	N	Q	P	L	P	V	D	R	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																		T	T		S	S																																								T	S					S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
Sequence	E	F	E	N	R	A	I	L	F	L	C	L	T	E	L	K	Q	F	L	V	N	R	K	H	A	Q	X	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)