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Protein Homology/analogY Recognition Engine V 2.2 |
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Fold library id | PDB Header | Molecule | Title |
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c3km5B_ | PDB header: cell invasion | Chain: B: PDB Molecule: lysine specific cysteine protease; | PDBTitle: crystal structure analysis of the k2 cleaved adhesin domain of lys-2 gingipain (kgp) |
Added to library: Sat Aug 28 16:33:39 2010 | |
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Links to external resources | |
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  | 1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 |
Sequence | A | D | F | T | E | T | F | E | S | S | T | H | G | E | A | P | A | E | W | T | T | I | D | A | D | G | D | G | Q | G | W | L | C | L | S | S | G | Q | L | D | W | L | T | A | H | G | G | S | N | V | V | S | S | F | S | W | N | G | M | A | L | N | P | D | N | Y | L | I | S | K |
Predicted secondary structure | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ||||||||||||||||||||||||||||||||||||||||||||||||||
SS confidence | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Known secondary structure (DSSP) | ![]() | ![]() | ![]() | T | T | S | T | T | S | T | T | ![]() | ![]() | ![]() | ![]() | T | T | S | S | ![]() | ![]() | ![]() | ![]() | T | T | T | T | T | S | S | S | S | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | S | B | S | S | S | B | ![]() | ![]() | ![]() | ![]() | ![]() | S |   | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 |
Sequence | D | V | T | G | A | T | K | V | K | Y | Y | Y | A | V | N | D | G | F | P | G | D | H | Y | A | V | M | I | S | K | T | G | T | N | A | G | D | F | T | V | V | F | E | E | T | P | N | G | I | N | K | G | G | A | R | F | G | L | S | T | E | A | K | P | Q | S | V | W | I | E | R |
Predicted secondary structure | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | |||||||||||||||||||||||||||||||||||||||||
SS confidence | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Known secondary structure (DSSP) | T | T | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | B | T | T | B | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | S | S | S | S | G | G | G | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | S | S | ![]() | ![]() | ![]() |   | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . |
Sequence | T | V | D | L | P | A | G | T | K | Y | V | A | F | R | H | Y | N | C | S | D | L | N | Y | I | L | L | D | D | I | Q | F | T | M | |||||||||||||||||||||||||||||||||||||
Predicted secondary structure | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | |||||||||||||||||||||||||||||||||||||||||||||||
SS confidence | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Known secondary structure (DSSP) | ![]() | ![]() | ![]() | T | T | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | S | S | S | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() |
Download: | PDB structure | FASTA sequence |
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