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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c3k71G_

Fold library idPDB HeaderMoleculeTitle
c3k71G_PDB header: cell adhesionChain: G: PDB Molecule: integrin alpha-x;PDBTitle: structure of integrin alphax beta2 ectodomain


Added to library: Thu Jan 10 06:59:02 2013
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence FNLDTEELTAFRVDSAGFGDSVVQYANSWVVVGAPQKITAANQTGGLYQCGYSTGACEPIGLQVPPEAVN
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Known secondary structure (DSSP)

B
SSS




SS
SS
STT
TT


TTT



TTTT





TTS
S
 .........80.........90.........100.........110.........120.........130.........140
Sequence MSLGLSLASTTSPSQLLACGPTVHHECGRNMYLTGLCFLLGPTQLTQRLPVSRQECPRQEQDIVFLIDGS
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Known secondary structure (DSSP)

TTSTTTTTT


SS



SSS

B

S
S




S


B

 .........150.........160.........170.........180.........190.........200.........210
Sequence GSISSRNFATMMNFVRAVISQFQRPSTQFSLMQFSNKFQTHFTFEEFRRSSNPLSLLASVHQLQGFTYTA
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Known secondary structure (DSSP) TTS
SSS
SSSSSSS


SSSS
SGGGTTT




S
B
 .........220.........230.........240.........250.........260.........270.........280
Sequence TAIQNVVHRLFHASYGARRDAAKILIVITDGKKEGDSLDYKDVIPMADAAGIIRYAIGVGLAFQNRNSWK
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Known secondary structure (DSSP) TTTTSTTTT

SSSBSS

BS
SS
S
BSSGGGSTTSS
 .........290.........300.........310.........320.........330.........340.........350
Sequence ELNDIASKPSQEHIFKVEDFDALKDIQNQLKEKIFAIEGTETTSSSSFELEMAQEGFSAVFTPDGPVLGA
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Known secondary structure (DSSP) TTS
S
TTTS


BS
SGGGSSST



SSSS



SSSB

TTSSB


TT

 .........360.........370.........380.........390.........400.........410.........420
Sequence VGSFTWSGGAFLYPPNMSPTFINMSQENVDMRDSYLGYSTELALWKGVQSLVLGAPRYQHTGKAVIFTQV
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Known secondary structure (DSSP) S
STTTTB

SSS




SS




S

BTSS



SSS
TTGGGT


 .........430.........440.........450.........460.........470.........480.........490
Sequence SRQWRMKAEVTGTQIGSYFGASLCSVDVDSDGSTDLVLIGAPHYYEQTRGGQVSVCPLPRGWRRWWCDAV
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Known secondary structure (DSSP) TTT



SSTTS
TTS

SSSSSS


SS

SS


B


SSTT


S
SS
 .........500.........510.........520.........530.........540.........550.........560
Sequence LYGEQGHPWGRFGAALTVLGDVNGDKLTDVVIGAPGEEENRGAVYLFHGVLGPSISPSHSQRIAGSQLSS
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Known secondary structure (DSSP)




S
SS

BTS
SSSSS


TTTTTS

BB
SSS
B
SS
SB

BTTSS

 .........570.........580.........590.........600.........610.........620.........630
Sequence RLQYFGQALSGGQDLTQDGLVDLAVGARGQVLLLRTRPVLWVGVSMQFIPAEIPRSAFECREQVVSEQTL
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Known secondary structure (DSSP) S
SS

S
SSS
SS
B

B

SS
S

STTTS

SSS



 .........640.........650.........660.........670.........680.........690.........700
Sequence VQSNICLYIDKRSKNLLGSRDLQSSVTLDLALDPGRLSPRATFQETKNRSLSRVRVLGLKAHCENFNLLL
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Known secondary structure (DSSP)


TTT
SSTTTS
STTSSS


TTT
SS
SS

 .........710.........720.........730.........740.........750.........760.........770
Sequence PSCVEDSVTPITLRLNFTLVGKPLLAFRNLRPMLAADAQRYFTASLPFEKNCGADHICQDNLGISFSFPG
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Known secondary structure (DSSP)
S

S

SS







SSSSS


B

SS









SSS







SS
 .........780.........790.........800.........810.........820.........830.........840
Sequence LKSLLVGSNLELNAEVMVWNDGEDSYGTTITFSHPAGLSYRYVAEGQKQGQLRSLHLTCDSAPVGSQGTW
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Known secondary structure (DSSP)

S
SS




SS
BSS
TT




SS

S






SSSS
 .........850.........860.........870.........880.........890.........900.........910
Sequence STSCRINHLIFRGGAQITFLATFDVSPKAVLGDRLLLTANVSSENNTPRTSKTTFQLELPVKYAVYTVVS
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Known secondary structure (DSSP)
TTS
B
TT


TT



SBTTB

SSS






 .........920.........930.........940.........950.........960.........970.........980
Sequence SHEQFTKYLNFSESEEKESHVAMHRYQVNNLGQRDLPVSINFWVPVELNQEAVWMDVEVSHPQNPSLRCS
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Known secondary structure (DSSP)
S






S

SS






SSS






STT

SB
S

TTS



 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence SEKIAPPASDFLAHIQKNPVLDCSIAGCLRFRCDVPSFSVQEELDFTLKGNLSFGWVRQILQKKVSVVSV
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Known secondary structure (DSSP)








TTTS
S


TT



B
SGGGTTTT
SS
 .........1060.........1070.........1080..
Sequence AEITFDTSVYSQLPGQEAFMRAQTTTVLEKYK
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Known secondary structure (DSSP)

TTTSSS

GGG





Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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