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  Protein Homology/analogY Recognition Engine V 2.2
 

Fold library entry viewer: c3k49C_

Fold library idPDB HeaderMoleculeTitle
c3k49C_PDB header: rna binding protein / rnaChain: C: PDB Molecule: mrna-binding protein puf3;PDBTitle: puf3 rna binding domain bound to cox17 rna 3' utr2 recognition sequence site b


Added to library: Sat Aug 28 22:29:23 2010
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence SPLLEQLRNSSSNMSLKDIFGHSLEFCKDQHGSRFIQRELATSPASEKEVIFNEIRDDAIELSNDVFGNY
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Known secondary structure (DSSP)
TT




GGGGTT
TSTT

GGGSTTT
 .........80.........90.........100.........110.........120.........130.........140
Sequence VIQKFFEFGSKIQKNTLVDQFKGNMKQLSLQMYACRVIQKALEYIDSNQRIELVLELSDSVLQMIKDQNG
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Known secondary structure (DSSP)

TT
STTS
GGGTT
STT
 .........150.........160.........170.........180.........190.........200.........210
Sequence NHVIQKAIETIPIEKLPFILSSLTGHIYHLSTHSYGCRVIQRLLEFGSSEDQESILNELKDFIPYLIQDQ
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Known secondary structure (DSSP) S
GGG
TTTTSTTS
TTTT
ST
 .........220.........230.........240.........250.........260.........270.........280
Sequence YGNYVIQYVLQQDQFTNKEMVDIKQEIIETVANNVVEYSKHKFASNVVEKSILYGSKNQKDLIISKILPR
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Known secondary structure (DSSP) TT

TTS
TTTSTTS
TTTS
S
 .........290.........300.........310.........320.........330.........340.........350
Sequence DKNHALNLEDDSPMILMIKDQFANYVIQKLVNVSEGEGKKLIVIAIRAYLDKLNKSNGNRHLASVEKLAA
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Known secondary structure (DSSP) ST

TTSTSTT








 ...
Sequence LVE
Predicted secondary structure

SS confidence


Known secondary structure (DSSP)


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction
Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960
 
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Michael Sternberg  
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