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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c3jd8A_

Fold library idPDB HeaderMoleculeTitle
c3jd8A_4.43PDB header: membrane proteinChain: A: PDB Molecule: niemann-pick c1 protein;


Added to library: Sat Jun 4 08:35:55 2016
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence QSCVWYGECGIAYGDKRYNCEYSGPPKPLPKDGYDLVQELCPGFFFGNVSLCCDVRQLQTLKDNLQLPLQ
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Known secondary structure (DSSP)


STT

S



GGG
GGG
STT
S

TT
 .........80.........90.........100.........110.........120.........130.........140
Sequence FLSRCPSCFYNLLNLFCELTCSPRQSQFLNVTATEDYVDPVTNQTKTNVKELQYYVGQSFANAMYNACRD
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Known secondary structure (DSSP) TT

TTGGGT
TTT


TT
 .........150.........160.........170.........180.........190.........200.........210
Sequence VEAPSSNDKALGLLCGKDADACNATNWIEYMFNKDNGQAPFTITPVFSDFPVHGMEPMNNATKGCDESVD
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Known secondary structure (DSSP)
B
SSSSSBTSSS
TTT

T
GGGSSSSS
SS
BTTB

B





TTS
SB
 .........220.........230.........240.........250.........260.........270.........280
Sequence EVTAPCSCQDCSIVCGPKPQPPPPPAPWTILGLDAMYVIMWITYMAFLLVFFGAFFAFEGCLRRLFTRWG
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Known secondary structure (DSSP) TTB



STT
SSS















 .........290.........300.........310.........320.........330.........340.........350
Sequence SFCVRNPGCVIFFSLVFITACSSGLVFVRVTTNPVDLWSAPSSQARLEKEYFDQHFGPFFRTEQLIIRAP
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Known secondary structure (DSSP) TS
ST
S





SS

S
SSTTS



T
 .........360.........370.........380.........390.........400.........410.........420
Sequence LTDKHIYQPYPSGADVPFGPPLDIQILHQVLDLQIAIENITASYDNETVTLQDICLAPLSPYNTNCTILS
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Known secondary structure (DSSP) T





TTT




GGGST
TTB

TTTTT





BS
 .........430.........440.........450.........460.........470.........480.........490
Sequence VLNYFQNSHSVLDHKKGDDFFVYADYHTHFLYCVRAPASLNDTSLLHDPCLGTFGGPVFPWLVLGGYDDQ
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Known secondary structure (DSSP) GGGGGTT



SS
STTTT
TT
SS
SSTT



S
TTSS


GGGTS
STT
 .........500.........510.........520.........530.........540.........550.........560
Sequence NYNNATALVITFPVNNYYNDTEKLQRAQAWEKEFINFVKNYKNPNLTISFTAERSIEDELNRESDSDVFT
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Known secondary structure (DSSP)
GGG
S


TT



TT



STT
 .........570.........580.........590.........600.........610.........620.........630
Sequence VVISYAIMFLYISLALGHMKSCRRLLVDSKVSLGIAGILIVLSSVACSLGVFSYIGLPLTLIVIEVIPFL
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Known secondary structure (DSSP) TTT
STTTT



ST
 .........640.........650.........660.........670.........680.........690.........700
Sequence VLAVGVDNIFILVQAYQRDERLQGETLDQQLGRVLGEVAPSMFLSSFSETVAFFLGALSVMPAVHTFSLF
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Known secondary structure (DSSP) T

SS

STTTTTTT

SSS
 .........710.........720.........730.........740.........750.........760.........770
Sequence AGLAVFIDFAEDGTSVQASESCLFRFFKNSYSPLLLKDWMRPIVIAIFVGVLSFSIAVLNKVDIGLDQSL
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Known secondary structure (DSSP)



TTS









S
S
 .........780.........790.........800.........810.........820.........830.........840
Sequence SMPDDSYMVDYFKSISQYLHAGPPVYFVLEEGHDYTSSKGQNMVCGGMGCNNDSLVQQIFNAAQLDNYTR
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Known secondary structure (DSSP)

S





B







TT
TT
S






S
 .........850.........860.........870.........880.........890.........900.........910
Sequence IGFAPSSWIDDYFDWVKPQSSCCRVPEGKQRPQGGDFMRFLPMFLSDNPNPKCGKGGHAAYSSAVNILLG
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Known secondary structure (DSSP) TTS




SSS








SSS

TS

S

SSS











TT
 .........920.........930.........940.........950.........960.........970.........980
Sequence HGTRVGATYFMTYHTVLQTSADFIDALKKARLIASNVTETMGINGSAYRVFPYSVFYVFYEQYLTIIDDT
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Known secondary structure (DSSP)
TTS












S
S

SS




B


TTGGGTT
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence IFNLGVSLGAIFLVTMVLLGCELWSAVIMCATIAMVLVNMFGVMWLWGISLNAVSLVNLVMSCGISVEFC
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Known secondary structure (DSSP) TTTTT

TTSSS


S
 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence SHITRAFTVSMKGSRVERAEEALAHMGSSVFSGITLTKFGGIVVLAFAKSQIFQIFYFRMYLAMVLLGAT
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Known secondary structure (DSSP) TTTT
SS

SSTS

S
 .........1130...
Sequence HGLIFLPVLLSYI
Predicted secondary structure
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Known secondary structure (DSSP)


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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