PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c3jclC_

Fold library id	PDB Header	Molecule	Title
c3jclC_	4.00	PDB header: viral protein	Chain: C: PDB Molecule: spike glycoprotein;

Links to external resources
Added to library: Sat Feb 6 08:24:12 2016

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence Y I G D F R C I Q L V N S N G A N V S A P S I S T E T V E V S Q G L G T Y Y V L D R V Y L N A T L L L T G Y Y P V D G S K F R N L A L R G T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S B
S S
G G G S T T
B
T T
S
T T
S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence N S V S L S W F Q P P Y L N Q F N D G I F A K V Q N L K T S T P S G A T A Y F P T I V I G S L F G Y T S Y T V V I E P Y N G V I M A S V C Q

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S G G G S S T T T S
T T
G G G T S
T T
S
S S
S T T S
T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence Y T I C Q L P Y T D C K P N T N G N K L I G F W H T D V K P P I C V L K R N F T L N V N A D A F Y F H F Y Q H G G T F Y A Y Y A D K P S A T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
B B S S
S S
T T
S
S S B
S S
T T
S T T S S S S
B

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence T F L F S V Y I G D I L T Q Y Y V L P F I C N P T A G S T F A P R Y W V T P L V K R Q Y L F N F N Q K G V I T S A V D C A S S Y T S E I K C

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
T T G G G
T T S
T T S

. . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . . . 340 . . . . . . . . . 350

Sequence K T Q S M L P S T G V Y E L S G Y T V Q P V G V V Y R R V A N L P A C N I E E W L T A R S V P S P L N W E R K T F Q N C N F N L S S L L R Y

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T S
S
B
T
S
T T S
S
T T T

. . . . . . . . . 360 . . . . . . . . . 370 . . . . . . . . . 380 . . . . . . . . . 390 . . . . . . . . . 400 . . . . . . . . . 410 . . . . . . . . . 420

Sequence V Q A E S L F C N N I D A S K V Y G R C F G S I S V D K F A V P R S R Q V D L Q L G N S G F L Q T A N Y K I D T A A T S C Q L H Y T L P K N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T S S
T T
S
G G G S T T
S S
B
S S S
T T

. . . . . . . . . 430 . . . . . . . . . 440 . . . . . . . . . 450 . . . . . . . . . 460 . . . . . . . . . 470 . . . . . . . . . 480 . . . . . . . . . 490

Sequence N V T I N N H N P S S W N R R Y G F N D A G V F G K N Q H D V V Y A Q Q C F T V R S S Y C P C A Q P D I V S P C T T Q T K P K S A F V N V G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T S
T T S S S
T T
T
B T S
G G G T T
S S
S S T T
T T T T T

. . . . . . . . . 500 . . . . . . . . . 510 . . . . . . . . . 520 . . . . . . . . . 530 . . . . . . . . . 540 . . . . . . . . . 550 . . . . . . . . . 560

Sequence D H C E G L G V L E D N C G N A D P H K G C I C A N N S F I G W S H D T C L V N D R C Q I F A N I L L N G I N S G T T C S T D L Q L P N T E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
T T
S S S S
S
S S
G G G
S
T T S S S S S
T T S
S
T T

. . . . . . . . . 570 . . . . . . . . . 580 . . . . . . . . . 590 . . . . . . . . . 600 . . . . . . . . . 610 . . . . . . . . . 620 . . . . . . . . . 630

Sequence V V T G I C V K Y D L Y G I T G Q G V F K E V K A D Y Y N S W Q T L L Y D V N G N L N G F R D L T T N K T Y T I R S C Y S G R V S A A F H K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
B S S T T
G G G
S S
S
T T S
T T T T
S
T

. . . . . . . . . 640 . . . . . . . . . 650 . . . . . . . . . 660 . . . . . . . . . 670 . . . . . . . . . 680 . . . . . . . . . 690 . . . . . . . . . 700

Sequence D A P E P A L L Y R N I N C S Y V F S N N I S R E E N P L N Y F D S Y L G C V V N A D N R T D E A L P N C D L R M G A G L C V D Y S K S R R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
S S
T
T T
S
S
T T
T T S
S S S
S
S T T S S

. . . . . . . . . 710 . . . . . . . . . 720 . . . . . . . . . 730 . . . . . . . . . 740 . . . . . . . . . 750 . . . . . . . . . 760 . . . . . . . . . 770

Sequence A H S S V S T G Y R L T T F E P Y T P M L V N D S V Q S V D G L Y E M Q I P T N F T I G H H E E F I Q T R S P K V T I D C A A F V C G D N T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
T T S S G G G
S

. . . . . . . . . 780 . . . . . . . . . 790 . . . . . . . . . 800 . . . . . . . . . 810 . . . . . . . . . 820 . . . . . . . . . 830 . . . . . . . . . 840

Sequence A C R Q Q L V E Y G S F C V N V N A I L N E V N N L L D N M Q L Q V A S A L M Q G V S A I R G R S A I E D L L F D K V K L S D V G F V E A Y

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) G G G T T
T
S
S

. . . . . . . . . 850 . . . . . . . . . 860 . . . . . . . . . 870 . . . . . . . . . 880 . . . . . . . . . 890 . . . . . . . . . 900 . . . . . . . . . 910

Sequence N N C T G G Q E V R D L L C V Q S F N G I K V L P P V L S E S Q I S G Y T T G A T A A A M F P P W S A A A G V P F S L S V Q Y R I N G L G V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) G G G T S S T T
T T
S S
S
T
T T T

. . . . . . . . . 920 . . . . . . . . . 930 . . . . . . . . . 940 . . . . . . . . . 950 . . . . . . . . . 960 . . . . . . . . . 970 . . . . . . . . . 980

Sequence T M N V L S E N Q K M I A S A F N N A L G A I Q D G F D A T N S A L G K I Q S V V N A N A E A L N N L L N Q L S N R F G A I S A S L Q E I L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T S S
T T S
G G G
S S S
S

. . . . . . . . . 990 . . . . . . . . . 1000 . . . . . . . . . 1010 . . . . . . . . . 1020 . . . . . . . . . 1030 . . . . . . . . . 1040 . . . . . . . . . 1050

Sequence T R L E A V E A K A Q I D R L I N G R L T A L N A Y I S K Q L S D S T L I K V S A A Q A I E K V N E C V K S Q T T R I N F C G N G N H I L S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T S
T S S
S S S S
T T
S S

. . . . . . . . . 1060 . . . . . . .

Sequence L V Q N A P Y G L Y F I H F S Y V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T

Download: PDB structure FASTA sequence
Hidden Markov model

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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	Y	I	G	D	F	R	C	I	Q	L	V	N	S	N	G	A	N	V	S	A	P	S	I	S	T	E	T	V	E	V	S	Q	G	L	G	T	Y	Y	V	L	D	R	V	Y	L	N	A	T	L	L	L	T	G	Y	Y	P	V	D	G	S	K	F	R	N	L	A	L	R	G	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S	S	B					S	S																			G	G	G	S	T	T		B			T	T					S												T	T											S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	N	S	V	S	L	S	W	F	Q	P	P	Y	L	N	Q	F	N	D	G	I	F	A	K	V	Q	N	L	K	T	S	T	P	S	G	A	T	A	Y	F	P	T	I	V	I	G	S	L	F	G	Y	T	S	Y	T	V	V	I	E	P	Y	N	G	V	I	M	A	S	V	C	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S				G	G	G	S	S	T	T	T	S				T	T									G	G	G	T	S		T	T					S							S	S		S	T	T	S									T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	Y	T	I	C	Q	L	P	Y	T	D	C	K	P	N	T	N	G	N	K	L	I	G	F	W	H	T	D	V	K	P	P	I	C	V	L	K	R	N	F	T	L	N	V	N	A	D	A	F	Y	F	H	F	Y	Q	H	G	G	T	F	Y	A	Y	Y	A	D	K	P	S	A	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			B	B	S	S					S	S				T	T				S		S	S	B			S	S														T	T		S										T	T								S	S	S	S		B
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	T	F	L	F	S	V	Y	I	G	D	I	L	T	Q	Y	Y	V	L	P	F	I	C	N	P	T	A	G	S	T	F	A	P	R	Y	W	V	T	P	L	V	K	R	Q	Y	L	F	N	F	N	Q	K	G	V	I	T	S	A	V	D	C	A	S	S	Y	T	S	E	I	K	C
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									S	S															T	T	G	G	G																					T	T	S								T	T	S
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Sequence	K	T	Q	S	M	L	P	S	T	G	V	Y	E	L	S	G	Y	T	V	Q	P	V	G	V	V	Y	R	R	V	A	N	L	P	A	C	N	I	E	E	W	L	T	A	R	S	V	P	S	P	L	N	W	E	R	K	T	F	Q	N	C	N	F	N	L	S	S	L	L	R	Y
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			T	S				S																										B								T		S					T	T	S								S									T	T	T
	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence	V	Q	A	E	S	L	F	C	N	N	I	D	A	S	K	V	Y	G	R	C	F	G	S	I	S	V	D	K	F	A	V	P	R	S	R	Q	V	D	L	Q	L	G	N	S	G	F	L	Q	T	A	N	Y	K	I	D	T	A	A	T	S	C	Q	L	H	Y	T	L	P	K	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T									S	S						T	T				S											G	G	G					S	T	T			S	S							B			S	S	S											T	T
	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490
Sequence	N	V	T	I	N	N	H	N	P	S	S	W	N	R	R	Y	G	F	N	D	A	G	V	F	G	K	N	Q	H	D	V	V	Y	A	Q	Q	C	F	T	V	R	S	S	Y	C	P	C	A	Q	P	D	I	V	S	P	C	T	T	Q	T	K	P	K	S	A	F	V	N	V	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		T	T	T	S																		T	T	S	S	S		T	T							T				B	T	S			G	G	G	T	T			S	S		S	S	T	T							T	T	T	T	T
	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560
Sequence	D	H	C	E	G	L	G	V	L	E	D	N	C	G	N	A	D	P	H	K	G	C	I	C	A	N	N	S	F	I	G	W	S	H	D	T	C	L	V	N	D	R	C	Q	I	F	A	N	I	L	L	N	G	I	N	S	G	T	T	C	S	T	D	L	Q	L	P	N	T	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T		T	T		S	S	S	S		S			S	S		G	G	G		S			T	T	S	S	S												S	S													T	T	S		S					T	T
	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630
Sequence	V	V	T	G	I	C	V	K	Y	D	L	Y	G	I	T	G	Q	G	V	F	K	E	V	K	A	D	Y	Y	N	S	W	Q	T	L	L	Y	D	V	N	G	N	L	N	G	F	R	D	L	T	T	N	K	T	Y	T	I	R	S	C	Y	S	G	R	V	S	A	A	F	H	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			B	S	S							T	T												G	G	G		S	S			S					T	T	S								T	T	T	T								S											T
	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700
Sequence	D	A	P	E	P	A	L	L	Y	R	N	I	N	C	S	Y	V	F	S	N	N	I	S	R	E	E	N	P	L	N	Y	F	D	S	Y	L	G	C	V	V	N	A	D	N	R	T	D	E	A	L	P	N	C	D	L	R	M	G	A	G	L	C	V	D	Y	S	K	S	R	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T		S	S							T									T	T		S		S			T	T						T	T					S		S								S	S		S				S	T	T				S	S
	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770
Sequence	A	H	S	S	V	S	T	G	Y	R	L	T	T	F	E	P	Y	T	P	M	L	V	N	D	S	V	Q	S	V	D	G	L	Y	E	M	Q	I	P	T	N	F	T	I	G	H	H	E	E	F	I	Q	T	R	S	P	K	V	T	I	D	C	A	A	F	V	C	G	D	N	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			T											T					T	T																	S	S	G	G	G																											S
	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840
Sequence	A	C	R	Q	Q	L	V	E	Y	G	S	F	C	V	N	V	N	A	I	L	N	E	V	N	N	L	L	D	N	M	Q	L	Q	V	A	S	A	L	M	Q	G	V	S	A	I	R	G	R	S	A	I	E	D	L	L	F	D	K	V	K	L	S	D	V	G	F	V	E	A	Y
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							G	G	G																															T	T																	T		S		S
	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910
Sequence	N	N	C	T	G	G	Q	E	V	R	D	L	L	C	V	Q	S	F	N	G	I	K	V	L	P	P	V	L	S	E	S	Q	I	S	G	Y	T	T	G	A	T	A	A	A	M	F	P	P	W	S	A	A	A	G	V	P	F	S	L	S	V	Q	Y	R	I	N	G	L	G	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			G	G	G	T	S	S	T	T									T	T							S	S																		S								T													T	T	T
	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980
Sequence	T	M	N	V	L	S	E	N	Q	K	M	I	A	S	A	F	N	N	A	L	G	A	I	Q	D	G	F	D	A	T	N	S	A	L	G	K	I	Q	S	V	V	N	A	N	A	E	A	L	N	N	L	L	N	Q	L	S	N	R	F	G	A	I	S	A	S	L	Q	E	I	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		T	T	T	S	S																					T	T	S																										G	G	G			S	S	S		S
	.	.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050
Sequence	T	R	L	E	A	V	E	A	K	A	Q	I	D	R	L	I	N	G	R	L	T	A	L	N	A	Y	I	S	K	Q	L	S	D	S	T	L	I	K	V	S	A	A	Q	A	I	E	K	V	N	E	C	V	K	S	Q	T	T	R	I	N	F	C	G	N	G	N	H	I	L	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T	S																																																	T	S	S					S	S	S	S		T	T		S	S
	.	.	.	.	.	.	.	.	.	1060	.	.	.	.	.	.	.
Sequence	L	V	Q	N	A	P	Y	G	L	Y	F	I	H	F	S	Y	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						T	T