Standard Mode | Switch to Expert Mode | Login to view past jobsRetrieve Phyre Job Id
 
Subscribe to Phyre at Google Groups
Email:
Visit Phyre at Google Groups
 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c3jcaE_

Fold library idPDB HeaderMoleculeTitle
c3jcaE_4.80PDB header: viral proteinChain: E: PDB Molecule: integrase;


Added to library: Sat Feb 20 08:22:08 2016
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence ALESAQESHALHHQNAAALRFQFHITREQAREIVKLCPNCPHAPQLGVNPRGLKPRVLWQMDVTHVSEFG
Predicted secondary structure




























SS confidence





































































Known secondary structure (DSSP)



T

T
TT




S






SSSSS


GGGG
 .........80.........90.........100.........110.........120.........130.........140
Sequence KLKYVHVTVDTYSHFTFATARTGEATKDVLQHLAQSFAYMGIPQKIKTDNAPAYVSRSIQEFLARWKISH
Predicted secondary structure




























SS confidence





































































Known secondary structure (DSSP) GGGTTTTS

ST


S

S
ST
 .........150.........160.........170.........180.........190.........200.........210
Sequence VTGIPYNPQGQAIVERTHQNIKAQLNKLQKAGKYYTPHHLLAHALFVLNHVNMDNQGHTAAERHWGPISA
Predicted secondary structure




























SS confidence





































































Known secondary structure (DSSP)

STT
GGGGT


SST
B
TTS
BS



 .........220.........230.........240.........250.........260..
Sequence DPKPMVMWKDLLTGSWKGPDVLITAGRGYACVFPQDAESPIWVPDRFIRPFT
Predicted secondary structure



























SS confidence



















































Known secondary structure (DSSP)



TTTTTT

TT
SS
GGG


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


Phyre is now FREE for commercial users!

All images and data generated by Phyre2 are free to use in any publication with acknowledgement

Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Michael Sternberg 
Disclaimer
Terms and Conditions
Structural Biology Group logo Imperial logo
BBSRC logo
Phyre2 is part of Genome3D