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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c3jbrA_

Fold library idPDB HeaderMoleculeTitle
c3jbrA_4.20PDB header: membrane proteinChain: A: PDB Molecule: voltage-dependent l-type calcium channel subunit alpha-1s;


Added to library: Sat Jan 2 08:37:32 2016
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence FCLTLQNPLRKACISIVEWKPFETIILLTIFANCVALAVYLPMPEDDNNSLNLGLEKLEYFFLTVFSIEA
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Known secondary structure (DSSP)


S


TTSSSS

TTTT

T
 .........80.........90.........100.........110.........120.........130.........140
Sequence AMKIIAYGFLFHQDAYLRSGWNVLDFIIVFLGVFTAILVKALRAFRVLRPLRLVSGVPSLQVVLNSIFKA
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Known secondary structure (DSSP) TTTTTTGGGS

GGGTTT
TT
 .........150.........160.........170.........180.........190.........200.........210
Sequence MLPLFHIALLVLFMVIIYAIIGLELFKGKMHKTCYYIGTDIVATVENEKPSPCARTGSGRPCTINGSECR
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Known secondary structure (DSSP) STTTTT




SSS


SSSSS





SSS



S
SSSS
 .........220.........230.........240.........250.........260.........270.........280
Sequence GGWPGPNHGITHFDNFGFSMLTVYQCITMEGWTDVLYWVNDAIGNEWPWIYFVTLILLGSFFILNLVLGV
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Known secondary structure (DSSP)



SSSS
S

SSSTTSSSS
SSS
 .........290.........300.........310.........320.........330.........340.........350
Sequence LSGEFTKEREKAQQLEEDLRGYMSWITQCHDLVKSRVFYWLVILIVALNTLSIASEHHNQPLWLTHLQDI
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Known secondary structure (DSSP)



TTT

TTT
SSTT
 .........360.........370.........380.........390.........400.........410.........420
Sequence ANRVLLSLFTIEMLLKMYGLGLRQYFMSIFNRFDCFVVCSGILELLLVESGAMTPLGISVLRCIRLLRLF
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Known secondary structure (DSSP)




SSTSTS
S

S
GG
 .........430.........440.........450.........460.........470.........480.........490
Sequence KITKYWTSLSNLVASLLNSIRSIASLLLLLFLFIIIFALLGMQLFGGRYDFEDTEVRRSNFDNFPQALIS
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Known secondary structure (DSSP) GGGG
STTTTTT



S
S




SSS
 .........500.........510.........520.........530.........540.........550.........560
Sequence VFQVLTGEDWNSVMYNGIMAYGGPSYPGVLVCIYFIILFVCGNYILLNVFLAIAVDNLAEAESATWFTNF
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Known secondary structure (DSSP) TSSTTSSSSSSGGGG

 .........570.........580.........590.........600.........610.........620.........630
Sequence ILLFILLSSAALAAEDPIRAESVRNQILGYFDIAFTSVFTVEIVLKMTTYGAFLHKGSFCRNYFNILDLL
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Known secondary structure (DSSP) T
TTSGGGGGS

TTT
T
 .........640.........650.........660.........670.........680.........690.........700
Sequence VVAVSLISMGLESSTISVVKILRVLRVLRPLRAINRAKGLKHVVQCVFVAIRTIGNIVLVTTLLQFMFAC
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Known secondary structure (DSSP) TT

SSSS


GGGGGGTTTGGGGGG
ST
 .........710.........720.........730.........740.........750.........760.........770
Sequence IGVQLFKGKFFSCNDLSKMTEEECRGYYYVYKDGDPTQMELRPRQWIHNDFHFDNVLSAMMSLFTVSTFE
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Known secondary structure (DSSP) TT




SSSTT
STTT

S


SSS
TT









SS

SSTTS
 .........780.........790.........800.........810.........820.........830.........840
Sequence GWPQLLYRAIDSNEEDMGPVYNNRVEMAIFFIIYIILIAFFMMNIFVGFVIVTFQEQGETEYPKNPYQYQ
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Known secondary structure (DSSP) ST

SSS



TTTTGGG



 .........850.........860.........870.........880.........890.........900.........910
Sequence VWYVVTSSYFEYLMFALIMLNTICLGMQHYHQSEEMNHISDILNVAFTIIFTLEMILKLLAFKARGYFGD
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Known secondary structure (DSSP) T




SS
SSTTTSTTTTSSS
 .........920.........930.........940.........950.........960.........970.........980
Sequence PWNVFDFLIVIGSIIDVILSEIDTRISSAFFRLFRVMRLIKLLSRAEGVRTLLWTFIKSFQALPYVALLI
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Known secondary structure (DSSP) TTT

TGGG
TTTTTT
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence VMLFFIYAVIGMQMFGKIALVDGTNRNNNFQTFPQAVLLLFRCATGEAWQEILLACSYGKLCDPESDYAP
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Known secondary structure (DSSP) TTT





S



TT
S
ST
STT

SSSSSS


S
 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence GEEYTCGTNFAYYYFISFYMLCAFLIINLFVAVIMDNFDYLTRDWSILGXXXXXXXXXXXXXXXXXXXXX
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Known secondary structure (DSSP) S

TTTT



TTTS
TTSS
S

 .........1130.........1140.........1150.........1160.........1170.........1180.........1190
Sequence XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
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Known secondary structure (DSSP) TTT
S





STT
SSSSGGGGSS
 .........1200.........1210.........1220....
Sequence XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
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Known secondary structure (DSSP)
TTT


ST


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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