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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c3jb9d_

Fold library idPDB HeaderMoleculeTitle
c3jb9d_PDB header: rna binding protein/rnaChain: D: PDB Molecule: small nuclear ribonucleoprotein sm d3;PDBTitle: cryo-em structure of the yeast spliceosome at 3.6 angstrom resolution


Added to library: Sat Sep 26 08:55:21 2015
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence MANVELQTSLGKILIELYTEHAPKTCQNFYTLAKEGYYDGVIFHRVIPDFVIQGGDPTGTGRGGTSIYGD
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Known secondary structure (DSSP)


SS


TTT
TTTSSTT




TTS




BSSSSSS



SSSS
 .........80.........90.........100.........110.........120.........130.........140
Sequence KFDDEIHSDLHHTGAGILSMANAGPNTNSSQFFITLAPTPWLDGKHTIFGRVVSGLSVCKRMGLIRTDSS
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Known secondary structure (DSSP)
B




SS



SSSSSSS

SS

GGGTTTS
TT

B
TT
 .........150.....
Sequence DRPIEPLKIIKAVAL
Predicted secondary structure






SS confidence














Known secondary structure (DSSP) S
BSS



Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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